miRNA display CGI


Results 61 - 80 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 55828 0.72 0.482135
Target:  5'- cCAGUcgCAGCGC--GGCAGGCcGGCCu -3'
miRNA:   3'- -GUCGuaGUCGCGguCUGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 103869 0.71 0.490346
Target:  5'- uGGCgAUCAGCGCCgacagggGGAUGGGCuGCCGc -3'
miRNA:   3'- gUCG-UAGUCGCGG-------UCUGUCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 74693 0.7 0.586199
Target:  5'- gCAGCAgcgacggCGGCGCCGcGGCA-GCGGCUc -3'
miRNA:   3'- -GUCGUa------GUCGCGGU-CUGUcCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 129126 0.7 0.586199
Target:  5'- -cGCG-CAGguaCGUCAGGCAGGCGGCg- -3'
miRNA:   3'- guCGUaGUC---GCGGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 214022 0.7 0.586199
Target:  5'- aCGGCGcUCaggguGGCGUUAGACcGGUGGCCGg -3'
miRNA:   3'- -GUCGU-AG-----UCGCGGUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 186814 0.7 0.590096
Target:  5'- aCGGCGUgGGCGaCCAGAUcugacgguccugcgaAuGGCGGCCc -3'
miRNA:   3'- -GUCGUAgUCGC-GGUCUG---------------U-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 100177 0.7 0.59595
Target:  5'- gGGUAg-GGCGCCAGgcGCAGGCucucGGCCGu -3'
miRNA:   3'- gUCGUagUCGCGGUC--UGUCCG----CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 121777 0.7 0.59595
Target:  5'- uGGUGUCGGC-CaCGGGCAGGUGGCg- -3'
miRNA:   3'- gUCGUAGUCGcG-GUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 222762 0.7 0.59595
Target:  5'- aCGGCcaCGGCGUCGGugGGGuCGGCgCAg -3'
miRNA:   3'- -GUCGuaGUCGCGGUCugUCC-GCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 118917 0.7 0.59595
Target:  5'- --uCGUCGGCGCCGcGGCguGGGCGGCg- -3'
miRNA:   3'- gucGUAGUCGCGGU-CUG--UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 103335 0.7 0.576478
Target:  5'- -cGCGcCAGCGCCGuGCGGuaGGCCAg -3'
miRNA:   3'- guCGUaGUCGCGGUcUGUCcgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 192457 0.7 0.576478
Target:  5'- uGGCggCGGCGCCGGuuucCAGGaCGGCg- -3'
miRNA:   3'- gUCGuaGUCGCGGUCu---GUCC-GCCGgu -5'
14147 5' -60.2 NC_003521.1 + 126477 0.71 0.508823
Target:  5'- cCAGCGUCaugaccgAGUGCagcacguugGGGCAGGUGGCCGa -3'
miRNA:   3'- -GUCGUAG-------UCGCGg--------UCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 109914 0.71 0.509754
Target:  5'- aCAGCGUCGuGUuGCCuGACGGGgGGUCGa -3'
miRNA:   3'- -GUCGUAGU-CG-CGGuCUGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 123557 0.71 0.509754
Target:  5'- gGGCAggugCAGCGCCAGGCAGuCGuGCa- -3'
miRNA:   3'- gUCGUa---GUCGCGGUCUGUCcGC-CGgu -5'
14147 5' -60.2 NC_003521.1 + 127760 0.71 0.52853
Target:  5'- gAGCcgCAGCGUCuccucguagucGGGC-GGCGGCCGu -3'
miRNA:   3'- gUCGuaGUCGCGG-----------UCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 74185 0.71 0.538015
Target:  5'- -cGCcgCGGCGCCcGGCGcGCGGCCc -3'
miRNA:   3'- guCGuaGUCGCGGuCUGUcCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 127376 0.7 0.557151
Target:  5'- gCGGCA--GGUGCguGAUgaaGGGCGGCCAc -3'
miRNA:   3'- -GUCGUagUCGCGguCUG---UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 212663 0.7 0.576478
Target:  5'- gGGUAUCAGCaugccCCAGACGGGCaGCg- -3'
miRNA:   3'- gUCGUAGUCGc----GGUCUGUCCGcCGgu -5'
14147 5' -60.2 NC_003521.1 + 75541 0.7 0.576478
Target:  5'- uCAGUucagCGGCGCCGG-C-GGCGGCUAc -3'
miRNA:   3'- -GUCGua--GUCGCGGUCuGuCCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.