miRNA display CGI


Results 81 - 100 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 115376 0.69 0.615519
Target:  5'- uGGC--CAGgGCCGGcaugugcagggcGCGGGCGGCCGc -3'
miRNA:   3'- gUCGuaGUCgCGGUC------------UGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 125277 0.69 0.615519
Target:  5'- gCAGCA-CGGCGCUccguCAGGCGaGCCGc -3'
miRNA:   3'- -GUCGUaGUCGCGGucu-GUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 151312 0.69 0.615519
Target:  5'- -cGCGcaaGGCgGCCAGGCGGGUGGCg- -3'
miRNA:   3'- guCGUag-UCG-CGGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 163206 0.69 0.615519
Target:  5'- gCGGCggCAGCGgCAGuaGCuccGGCGGCCu -3'
miRNA:   3'- -GUCGuaGUCGCgGUC--UGu--CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 145871 0.69 0.615519
Target:  5'- gCGGCGggCGGCGCCGacGACgAGGCcGCCGg -3'
miRNA:   3'- -GUCGUa-GUCGCGGU--CUG-UCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 168510 0.69 0.625324
Target:  5'- aGGCGgaggaCGGCGacgccagCAGGCuGGCGGCCAg -3'
miRNA:   3'- gUCGUa----GUCGCg------GUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 36002 0.69 0.625324
Target:  5'- uCAGCGaCGGCGaCGGAgGuGGCGGCCc -3'
miRNA:   3'- -GUCGUaGUCGCgGUCUgU-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 118917 0.7 0.59595
Target:  5'- --uCGUCGGCGCCGcGGCguGGGCGGCg- -3'
miRNA:   3'- gucGUAGUCGCGGU-CUG--UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 222762 0.7 0.59595
Target:  5'- aCGGCcaCGGCGUCGGugGGGuCGGCgCAg -3'
miRNA:   3'- -GUCGuaGUCGCGGUCugUCC-GCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 121777 0.7 0.59595
Target:  5'- uGGUGUCGGC-CaCGGGCAGGUGGCg- -3'
miRNA:   3'- gUCGUAGUCGcG-GUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 212663 0.7 0.576478
Target:  5'- gGGUAUCAGCaugccCCAGACGGGCaGCg- -3'
miRNA:   3'- gUCGUAGUCGc----GGUCUGUCCGcCGgu -5'
14147 5' -60.2 NC_003521.1 + 75541 0.7 0.576478
Target:  5'- uCAGUucagCGGCGCCGG-C-GGCGGCUAc -3'
miRNA:   3'- -GUCGua--GUCGCGGUCuGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 192457 0.7 0.576478
Target:  5'- uGGCggCGGCGCCGGuuucCAGGaCGGCg- -3'
miRNA:   3'- gUCGuaGUCGCGGUCu---GUCC-GCCGgu -5'
14147 5' -60.2 NC_003521.1 + 103335 0.7 0.576478
Target:  5'- -cGCGcCAGCGCCGuGCGGuaGGCCAg -3'
miRNA:   3'- guCGUaGUCGCGGUcUGUCcgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 74693 0.7 0.586199
Target:  5'- gCAGCAgcgacggCGGCGCCGcGGCA-GCGGCUc -3'
miRNA:   3'- -GUCGUa------GUCGCGGU-CUGUcCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 129126 0.7 0.586199
Target:  5'- -cGCG-CAGguaCGUCAGGCAGGCGGCg- -3'
miRNA:   3'- guCGUaGUC---GCGGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 214022 0.7 0.586199
Target:  5'- aCGGCGcUCaggguGGCGUUAGACcGGUGGCCGg -3'
miRNA:   3'- -GUCGU-AG-----UCGCGGUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 186814 0.7 0.590096
Target:  5'- aCGGCGUgGGCGaCCAGAUcugacgguccugcgaAuGGCGGCCc -3'
miRNA:   3'- -GUCGUAgUCGC-GGUCUG---------------U-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 100177 0.7 0.59595
Target:  5'- gGGUAg-GGCGCCAGgcGCAGGCucucGGCCGu -3'
miRNA:   3'- gUCGUagUCGCGGUC--UGUCCG----CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 239545 0.69 0.625324
Target:  5'- --uCGUCGGCGUC--GCGGGCGGCUAg -3'
miRNA:   3'- gucGUAGUCGCGGucUGUCCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.