Results 121 - 140 of 252 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 79753 | 0.69 | 0.635135 |
Target: 5'- -cGaCAUCAGCGCCGGGCcGGUgaGGaCCGg -3' miRNA: 3'- guC-GUAGUCGCGGUCUGuCCG--CC-GGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 39588 | 0.69 | 0.634154 |
Target: 5'- cCGGCGUCGGCGguccugcCCuGGguGGCGGCg- -3' miRNA: 3'- -GUCGUAGUCGC-------GGuCUguCCGCCGgu -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 100177 | 0.7 | 0.59595 |
Target: 5'- gGGUAg-GGCGCCAGgcGCAGGCucucGGCCGu -3' miRNA: 3'- gUCGUagUCGCGGUC--UGUCCG----CCGGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 121777 | 0.7 | 0.59595 |
Target: 5'- uGGUGUCGGC-CaCGGGCAGGUGGCg- -3' miRNA: 3'- gUCGUAGUCGcG-GUCUGUCCGCCGgu -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 222762 | 0.7 | 0.59595 |
Target: 5'- aCGGCcaCGGCGUCGGugGGGuCGGCgCAg -3' miRNA: 3'- -GUCGuaGUCGCGGUCugUCC-GCCG-GU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 118917 | 0.7 | 0.59595 |
Target: 5'- --uCGUCGGCGCCGcGGCguGGGCGGCg- -3' miRNA: 3'- gucGUAGUCGCGGU-CUG--UCCGCCGgu -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 154479 | 0.69 | 0.605725 |
Target: 5'- cCGGCAccgcCGGCGCCGGcaagaccuccaGCAuccaggugcuGGCGGCCAa -3' miRNA: 3'- -GUCGUa---GUCGCGGUC-----------UGU----------CCGCCGGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 213728 | 0.69 | 0.605725 |
Target: 5'- cCAGCcagaCGGCGCCgcagaAGGCcgugguGGCGGCCAc -3' miRNA: 3'- -GUCGua--GUCGCGG-----UCUGu-----CCGCCGGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 123349 | 0.69 | 0.61258 |
Target: 5'- cCAGCGccgCGGCcguggccuccgacaGCCGcaccGACAGGCGGCUAg -3' miRNA: 3'- -GUCGUa--GUCG--------------CGGU----CUGUCCGCCGGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 115376 | 0.69 | 0.615519 |
Target: 5'- uGGC--CAGgGCCGGcaugugcagggcGCGGGCGGCCGc -3' miRNA: 3'- gUCGuaGUCgCGGUC------------UGUCCGCCGGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 125277 | 0.69 | 0.615519 |
Target: 5'- gCAGCA-CGGCGCUccguCAGGCGaGCCGc -3' miRNA: 3'- -GUCGUaGUCGCGGucu-GUCCGC-CGGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 239545 | 0.69 | 0.625324 |
Target: 5'- --uCGUCGGCGUC--GCGGGCGGCUAg -3' miRNA: 3'- gucGUAGUCGCGGucUGUCCGCCGGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 36002 | 0.69 | 0.625324 |
Target: 5'- uCAGCGaCGGCGaCGGAgGuGGCGGCCc -3' miRNA: 3'- -GUCGUaGUCGCgGUCUgU-CCGCCGGu -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 168510 | 0.69 | 0.625324 |
Target: 5'- aGGCGgaggaCGGCGacgccagCAGGCuGGCGGCCAg -3' miRNA: 3'- gUCGUa----GUCGCg------GUCUGuCCGCCGGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 145871 | 0.69 | 0.615519 |
Target: 5'- gCGGCGggCGGCGCCGacGACgAGGCcGCCGg -3' miRNA: 3'- -GUCGUa-GUCGCGGU--CUG-UCCGcCGGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 163206 | 0.69 | 0.615519 |
Target: 5'- gCGGCggCAGCGgCAGuaGCuccGGCGGCCu -3' miRNA: 3'- -GUCGuaGUCGCgGUC--UGu--CCGCCGGu -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 151312 | 0.69 | 0.615519 |
Target: 5'- -cGCGcaaGGCgGCCAGGCGGGUGGCg- -3' miRNA: 3'- guCGUag-UCG-CGGUCUGUCCGCCGgu -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 108132 | 0.66 | 0.820694 |
Target: 5'- -cGCGUCc-CGCCAGcCGGGCGcgaGCCGa -3' miRNA: 3'- guCGUAGucGCGGUCuGUCCGC---CGGU- -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 95718 | 0.76 | 0.293174 |
Target: 5'- cCGGUAguuaGGCGCCAGguccaGCAGGCGGCUg -3' miRNA: 3'- -GUCGUag--UCGCGGUC-----UGUCCGCCGGu -5' |
|||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 103218 | 0.76 | 0.293174 |
Target: 5'- aGGCGUcCAGCGCgCGGuACAGGuCGGCCu -3' miRNA: 3'- gUCGUA-GUCGCG-GUC-UGUCC-GCCGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home