miRNA display CGI


Results 21 - 40 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 98878 0.7 0.566793
Target:  5'- cCAGCAggUgGGCGCCcacgcgcugcacGGuCAGGCGGCUg -3'
miRNA:   3'- -GUCGU--AgUCGCGG------------UCuGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 76365 0.71 0.519109
Target:  5'- gCGGCAgCGGCGaCCGuGACGGccGCGGCCGc -3'
miRNA:   3'- -GUCGUaGUCGC-GGU-CUGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 211707 0.72 0.446482
Target:  5'- gUAGCAgcgCAGCGCgCGGAUGGuGCGGCgAa -3'
miRNA:   3'- -GUCGUa--GUCGCG-GUCUGUC-CGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 236491 0.74 0.364289
Target:  5'- gCGGCggUGGCGCCAGGCAuGGaCGGUCGa -3'
miRNA:   3'- -GUCGuaGUCGCGGUCUGU-CC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 111090 0.69 0.605725
Target:  5'- aCGGCGcggacgcgcUCGGCGUC-GACGGGCcgcGGCCGg -3'
miRNA:   3'- -GUCGU---------AGUCGCGGuCUGUCCG---CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 43417 0.7 0.594973
Target:  5'- uCGGCGUCGugGCCAGACAcccagucccgggcGGCGaGCCAg -3'
miRNA:   3'- -GUCGUAGUcgCGGUCUGU-------------CCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 109340 0.71 0.519109
Target:  5'- aGGCggCAGCaGCCGGcGCAGGaGGCCGa -3'
miRNA:   3'- gUCGuaGUCG-CGGUC-UGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 103218 0.76 0.293174
Target:  5'- aGGCGUcCAGCGCgCGGuACAGGuCGGCCu -3'
miRNA:   3'- gUCGUA-GUCGCG-GUC-UGUCC-GCCGGu -5'
14147 5' -60.2 NC_003521.1 + 122737 0.7 0.593021
Target:  5'- gGGCGaCGGCGCCGccgauggcuGACAccgggcacggggauGGCGGCCGa -3'
miRNA:   3'- gUCGUaGUCGCGGU---------CUGU--------------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 95718 0.76 0.293174
Target:  5'- cCGGUAguuaGGCGCCAGguccaGCAGGCGGCUg -3'
miRNA:   3'- -GUCGUag--UCGCGGUC-----UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 201378 0.71 0.519109
Target:  5'- gCGGCccUCGGCGCCGGGCu--CGGCCGg -3'
miRNA:   3'- -GUCGu-AGUCGCGGUCUGuccGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 123584 0.7 0.566793
Target:  5'- uGGCggCGGCGCCGGGagccgccGCGGCCGu -3'
miRNA:   3'- gUCGuaGUCGCGGUCUguc----CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 108028 0.72 0.482135
Target:  5'- --uCGUCGGCGUCAGGC-GGCGGCgGg -3'
miRNA:   3'- gucGUAGUCGCGGUCUGuCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 166631 0.72 0.455259
Target:  5'- aCGGCGUCGggccgcGCGCCGGGCGccgcggcgcaGCGGCCAg -3'
miRNA:   3'- -GUCGUAGU------CGCGGUCUGUc---------CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 106295 0.73 0.420729
Target:  5'- gGGCAaCAGCaaCCAGGC-GGCGGCCGu -3'
miRNA:   3'- gUCGUaGUCGc-GGUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 23091 0.74 0.372025
Target:  5'- -uGCGUCcGUgGCCGGGCGGGgGGCCGg -3'
miRNA:   3'- guCGUAGuCG-CGGUCUGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 106105 0.69 0.615519
Target:  5'- aGGCcUCGG-GCaCGGGCGuGGCGGCCGu -3'
miRNA:   3'- gUCGuAGUCgCG-GUCUGU-CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 104261 0.69 0.615519
Target:  5'- gCAGCggCAGCuGCCAGuC-GGCGGCgAa -3'
miRNA:   3'- -GUCGuaGUCG-CGGUCuGuCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 126310 0.69 0.605725
Target:  5'- -cGUggCGGCGgUGGGCAcGGCGGCCAc -3'
miRNA:   3'- guCGuaGUCGCgGUCUGU-CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 122659 0.7 0.59595
Target:  5'- gGGCGUCGucuGCGgCGGugGGGUGGCg- -3'
miRNA:   3'- gUCGUAGU---CGCgGUCugUCCGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.