miRNA display CGI


Results 41 - 60 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 91939 0.69 0.605725
Target:  5'- uCGGCGUCGGCcacggccgagGCCAGGCuGGCGuaGCUg -3'
miRNA:   3'- -GUCGUAGUCG----------CGGUCUGuCCGC--CGGu -5'
14147 5' -60.2 NC_003521.1 + 109340 0.71 0.519109
Target:  5'- aGGCggCAGCaGCCGGcGCAGGaGGCCGa -3'
miRNA:   3'- gUCGuaGUCG-CGGUC-UGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 103218 0.76 0.293174
Target:  5'- aGGCGUcCAGCGCgCGGuACAGGuCGGCCu -3'
miRNA:   3'- gUCGUA-GUCGCG-GUC-UGUCC-GCCGGu -5'
14147 5' -60.2 NC_003521.1 + 184030 0.69 0.605725
Target:  5'- -cGCG-CGaCGCCGGuuGGGCGGCCAu -3'
miRNA:   3'- guCGUaGUcGCGGUCugUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 95718 0.76 0.293174
Target:  5'- cCGGUAguuaGGCGCCAGguccaGCAGGCGGCUg -3'
miRNA:   3'- -GUCGUag--UCGCGGUC-----UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 95645 0.68 0.693695
Target:  5'- gCAGCA--GGUGCCAGACGGaGUugcgcgacuGGCCGc -3'
miRNA:   3'- -GUCGUagUCGCGGUCUGUC-CG---------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 23091 0.74 0.372025
Target:  5'- -uGCGUCcGUgGCCGGGCGGGgGGCCGg -3'
miRNA:   3'- guCGUAGuCG-CGGUCUGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 220118 0.68 0.684007
Target:  5'- --aCGUCAcGCGCCAGguugGCGGGCGGUUc -3'
miRNA:   3'- gucGUAGU-CGCGGUC----UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 91987 0.68 0.674281
Target:  5'- aCGGCAcgcaccUCGGCcgaGGGCAGGCGGUCGc -3'
miRNA:   3'- -GUCGU------AGUCGcggUCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 169449 0.69 0.644943
Target:  5'- aCGGCGUCGGCGgCGG-CGGGUucgucGCCAg -3'
miRNA:   3'- -GUCGUAGUCGCgGUCuGUCCGc----CGGU- -5'
14147 5' -60.2 NC_003521.1 + 96614 0.69 0.628268
Target:  5'- aGGCGUCGGCgcacugcugcagcuuGCCGuucuccagcgcgcGGCAGGCGGCg- -3'
miRNA:   3'- gUCGUAGUCG---------------CGGU-------------CUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 106105 0.69 0.615519
Target:  5'- aGGCcUCGG-GCaCGGGCGuGGCGGCCGu -3'
miRNA:   3'- gUCGuAGUCgCG-GUCUGU-CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 104261 0.69 0.615519
Target:  5'- gCAGCggCAGCuGCCAGuC-GGCGGCgAa -3'
miRNA:   3'- -GUCGuaGUCG-CGGUCuGuCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 123204 0.7 0.59595
Target:  5'- -cGCAUaCGGCGCCggguaGGACggGGGCGGCg- -3'
miRNA:   3'- guCGUA-GUCGCGG-----UCUG--UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 122737 0.7 0.593021
Target:  5'- gGGCGaCGGCGCCGccgauggcuGACAccgggcacggggauGGCGGCCGa -3'
miRNA:   3'- gUCGUaGUCGCGGU---------CUGU--------------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 98878 0.7 0.566793
Target:  5'- cCAGCAggUgGGCGCCcacgcgcugcacGGuCAGGCGGCUg -3'
miRNA:   3'- -GUCGU--AgUCGCGG------------UCuGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 76365 0.71 0.519109
Target:  5'- gCGGCAgCGGCGaCCGuGACGGccGCGGCCGc -3'
miRNA:   3'- -GUCGUaGUCGC-GGU-CUGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 108028 0.72 0.482135
Target:  5'- --uCGUCGGCGUCAGGC-GGCGGCgGg -3'
miRNA:   3'- gucGUAGUCGCGGUCUGuCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 166631 0.72 0.455259
Target:  5'- aCGGCGUCGggccgcGCGCCGGGCGccgcggcgcaGCGGCCAg -3'
miRNA:   3'- -GUCGUAGU------CGCGGUCUGUc---------CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 106295 0.73 0.420729
Target:  5'- gGGCAaCAGCaaCCAGGC-GGCGGCCGu -3'
miRNA:   3'- gUCGUaGUCGc-GGUCUGuCCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.