miRNA display CGI


Results 61 - 80 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 104261 0.69 0.615519
Target:  5'- gCAGCggCAGCuGCCAGuC-GGCGGCgAa -3'
miRNA:   3'- -GUCGuaGUCG-CGGUCuGuCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 7820 0.69 0.625324
Target:  5'- aCGGCGUCaaggccauccGGCGCCAGAagacgaggGGGUGGCgGa -3'
miRNA:   3'- -GUCGUAG----------UCGCGGUCUg-------UCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 75034 0.73 0.412346
Target:  5'- -uGCGacggCAGCGCCAG-CGGGCuGGCCu -3'
miRNA:   3'- guCGUa---GUCGCGGUCuGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 107337 0.72 0.436936
Target:  5'- gCAGCAgCGGCGCCAGGugauccucgaccuCGGGCGGaCAc -3'
miRNA:   3'- -GUCGUaGUCGCGGUCU-------------GUCCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 198211 0.72 0.455259
Target:  5'- gCGGCGaCGGCGCC--GCcGGCGGCCGu -3'
miRNA:   3'- -GUCGUaGUCGCGGucUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 98477 0.72 0.482135
Target:  5'- gCGGCcgCGGCgGCCGuGGC-GGCGGCCu -3'
miRNA:   3'- -GUCGuaGUCG-CGGU-CUGuCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 167150 0.71 0.537063
Target:  5'- gCAGCGccuUgGGCGCCucGGGCgucuuggAGGCGGCCGc -3'
miRNA:   3'- -GUCGU---AgUCGCGG--UCUG-------UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 123584 0.7 0.566793
Target:  5'- uGGCggCGGCGCCGGGagccgccGCGGCCGu -3'
miRNA:   3'- gUCGuaGUCGCGGUCUguc----CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 43417 0.7 0.594973
Target:  5'- uCGGCGUCGugGCCAGACAcccagucccgggcGGCGaGCCAg -3'
miRNA:   3'- -GUCGUAGUcgCGGUCUGU-------------CCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 237149 0.69 0.604747
Target:  5'- uCAGCAUCcgacgagggucccGGcCGCCgAGGCAgacggcGGCGGCCGu -3'
miRNA:   3'- -GUCGUAG-------------UC-GCGG-UCUGU------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 113824 0.67 0.756069
Target:  5'- gGGCAccgccacgucgggCAGCGgCAGcgGGGCGGCCGg -3'
miRNA:   3'- gUCGUa------------GUCGCgGUCugUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 172308 0.67 0.750544
Target:  5'- cCGGUGUCgguGGCGCCAGGCcggucGCGGCgGa -3'
miRNA:   3'- -GUCGUAG---UCGCGGUCUGuc---CGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 59506 0.69 0.644943
Target:  5'- cCAGa--CGGCGCCcuGGcccGCGGGCGGCCu -3'
miRNA:   3'- -GUCguaGUCGCGG--UC---UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 196974 0.69 0.654741
Target:  5'- cCGGCcggGGCGCCuguGACGGGCccgcGGCCGg -3'
miRNA:   3'- -GUCGuagUCGCGGu--CUGUCCG----CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 220118 0.68 0.684007
Target:  5'- --aCGUCAcGCGCCAGguugGCGGGCGGUUc -3'
miRNA:   3'- gucGUAGU-CGCGGUC----UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 95645 0.68 0.693695
Target:  5'- gCAGCA--GGUGCCAGACGGaGUugcgcgacuGGCCGc -3'
miRNA:   3'- -GUCGUagUCGCGGUCUGUC-CG---------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 348 0.68 0.703334
Target:  5'- aAGCGUgAGCuGCCGGA--GGCGGCg- -3'
miRNA:   3'- gUCGUAgUCG-CGGUCUguCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 122508 0.68 0.712919
Target:  5'- gGGCcaacgCGGCGgCGGGCAGGcCGGCg- -3'
miRNA:   3'- gUCGua---GUCGCgGUCUGUCC-GCCGgu -5'
14147 5' -60.2 NC_003521.1 + 110987 0.67 0.731891
Target:  5'- gGGCA-CGGCcacgggccCCAGcaGCAGGCGGCCc -3'
miRNA:   3'- gUCGUaGUCGc-------GGUC--UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 151810 0.67 0.741261
Target:  5'- -cGCcgUGGCGCCGGugGGGCccgcGGCa- -3'
miRNA:   3'- guCGuaGUCGCGGUCugUCCG----CCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.