miRNA display CGI


Results 81 - 100 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 128405 0.69 0.654741
Target:  5'- gAGCG--GGCGUCGGuccgaaAGGCGGCCGg -3'
miRNA:   3'- gUCGUagUCGCGGUCug----UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 98221 0.68 0.684007
Target:  5'- gGGCAgCGGCGUgGGAgGcggggaggcgggGGCGGCCAc -3'
miRNA:   3'- gUCGUaGUCGCGgUCUgU------------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 113355 0.68 0.684007
Target:  5'- -cGCAucUCGGCGCU-GGCGGGCgucaacaacGGCCAg -3'
miRNA:   3'- guCGU--AGUCGCGGuCUGUCCG---------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 106757 0.68 0.703334
Target:  5'- -cGCGUCcagGGCGCC---CAGGCGGUCGa -3'
miRNA:   3'- guCGUAG---UCGCGGucuGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 128017 0.68 0.712919
Target:  5'- gGGUcgCGGCcgucCCAGAgcgcgugcccgUAGGCGGCCAg -3'
miRNA:   3'- gUCGuaGUCGc---GGUCU-----------GUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 110987 0.67 0.731891
Target:  5'- gGGCA-CGGCcacgggccCCAGcaGCAGGCGGCCc -3'
miRNA:   3'- gUCGUaGUCGc-------GGUC--UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 151810 0.67 0.741261
Target:  5'- -cGCcgUGGCGCCGGugGGGCccgcGGCa- -3'
miRNA:   3'- guCGuaGUCGCGGUCugUCCG----CCGgu -5'
14147 5' -60.2 NC_003521.1 + 237149 0.69 0.604747
Target:  5'- uCAGCAUCcgacgagggucccGGcCGCCgAGGCAgacggcGGCGGCCGu -3'
miRNA:   3'- -GUCGUAG-------------UC-GCGG-UCUGU------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 43417 0.7 0.594973
Target:  5'- uCGGCGUCGugGCCAGACAcccagucccgggcGGCGaGCCAg -3'
miRNA:   3'- -GUCGUAGUcgCGGUCUGU-------------CCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 123584 0.7 0.566793
Target:  5'- uGGCggCGGCGCCGGGagccgccGCGGCCGu -3'
miRNA:   3'- gUCGuaGUCGCGGUCUguc----CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 140150 0.67 0.772418
Target:  5'- uCAGCAUCAccacuaucaccauccGCaGCCGacgcaacgcGGCGGGaCGGCCGg -3'
miRNA:   3'- -GUCGUAGU---------------CG-CGGU---------CUGUCC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 87785 0.66 0.777788
Target:  5'- gGGCcgCcuCGUCGGucuCGGGCGGCCu -3'
miRNA:   3'- gUCGuaGucGCGGUCu--GUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 1050 0.66 0.777788
Target:  5'- cCGGCGUCGGgGCCAccGACcuGC-GCCAg -3'
miRNA:   3'- -GUCGUAGUCgCGGU--CUGucCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 101997 0.66 0.786639
Target:  5'- aGGCcgUAGcCGCCGccauCAGGCGcGCCAu -3'
miRNA:   3'- gUCGuaGUC-GCGGUcu--GUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 128434 0.66 0.795364
Target:  5'- uCGGCG-CAcuGCGCCAGcCAGGUGGaCGa -3'
miRNA:   3'- -GUCGUaGU--CGCGGUCuGUCCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 75034 0.73 0.412346
Target:  5'- -uGCGacggCAGCGCCAG-CGGGCuGGCCu -3'
miRNA:   3'- guCGUa---GUCGCGGUCuGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 107337 0.72 0.436936
Target:  5'- gCAGCAgCGGCGCCAGGugauccucgaccuCGGGCGGaCAc -3'
miRNA:   3'- -GUCGUaGUCGCGGUCU-------------GUCCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 198211 0.72 0.455259
Target:  5'- gCGGCGaCGGCGCC--GCcGGCGGCCGu -3'
miRNA:   3'- -GUCGUaGUCGCGGucUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 98477 0.72 0.482135
Target:  5'- gCGGCcgCGGCgGCCGuGGC-GGCGGCCu -3'
miRNA:   3'- -GUCGuaGUCG-CGGU-CUGuCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 167150 0.71 0.537063
Target:  5'- gCAGCGccuUgGGCGCCucGGGCgucuuggAGGCGGCCGc -3'
miRNA:   3'- -GUCGU---AgUCGCGG--UCUG-------UCCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.