Results 101 - 120 of 252 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 235129 | 0.66 | 0.795364 |
Target: 5'- cCGGUGaCGGCGCCcguuccccgcGGACGGGCGcCCGu -3' miRNA: 3'- -GUCGUaGUCGCGG----------UCUGUCCGCcGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 98221 | 0.68 | 0.684007 |
Target: 5'- gGGCAgCGGCGUgGGAgGcggggaggcgggGGCGGCCAc -3' miRNA: 3'- gUCGUaGUCGCGgUCUgU------------CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 194276 | 0.66 | 0.795364 |
Target: 5'- uCAGCAccCGGCGCgAGGCccuGGUGcGCCu -3' miRNA: 3'- -GUCGUa-GUCGCGgUCUGu--CCGC-CGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 75034 | 0.73 | 0.412346 |
Target: 5'- -uGCGacggCAGCGCCAG-CGGGCuGGCCu -3' miRNA: 3'- guCGUa---GUCGCGGUCuGUCCG-CCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 107337 | 0.72 | 0.436936 |
Target: 5'- gCAGCAgCGGCGCCAGGugauccucgaccuCGGGCGGaCAc -3' miRNA: 3'- -GUCGUaGUCGCGGUCU-------------GUCCGCCgGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 198211 | 0.72 | 0.455259 |
Target: 5'- gCGGCGaCGGCGCC--GCcGGCGGCCGu -3' miRNA: 3'- -GUCGUaGUCGCGGucUGuCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 98477 | 0.72 | 0.482135 |
Target: 5'- gCGGCcgCGGCgGCCGuGGC-GGCGGCCu -3' miRNA: 3'- -GUCGuaGUCG-CGGU-CUGuCCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 167150 | 0.71 | 0.537063 |
Target: 5'- gCAGCGccuUgGGCGCCucGGGCgucuuggAGGCGGCCGc -3' miRNA: 3'- -GUCGU---AgUCGCGG--UCUG-------UCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 123584 | 0.7 | 0.566793 |
Target: 5'- uGGCggCGGCGCCGGGagccgccGCGGCCGu -3' miRNA: 3'- gUCGuaGUCGCGGUCUguc----CGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 43417 | 0.7 | 0.594973 |
Target: 5'- uCGGCGUCGugGCCAGACAcccagucccgggcGGCGaGCCAg -3' miRNA: 3'- -GUCGUAGUcgCGGUCUGU-------------CCGC-CGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 237149 | 0.69 | 0.604747 |
Target: 5'- uCAGCAUCcgacgagggucccGGcCGCCgAGGCAgacggcGGCGGCCGu -3' miRNA: 3'- -GUCGUAG-------------UC-GCGG-UCUGU------CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 125408 | 0.69 | 0.615519 |
Target: 5'- -cGCcgCGGCGCUgaguccggAGGCcguGGCGGCCGc -3' miRNA: 3'- guCGuaGUCGCGG--------UCUGu--CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 14732 | 0.69 | 0.625324 |
Target: 5'- uGGUAUCuguuGgGCguGACGGGCcGGCCGc -3' miRNA: 3'- gUCGUAGu---CgCGguCUGUCCG-CCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 13851 | 0.69 | 0.634154 |
Target: 5'- uGGC-UCGGCGCgGGggucucuGCGGGCGGCg- -3' miRNA: 3'- gUCGuAGUCGCGgUC-------UGUCCGCCGgu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 128405 | 0.69 | 0.654741 |
Target: 5'- gAGCG--GGCGUCGGuccgaaAGGCGGCCGg -3' miRNA: 3'- gUCGUagUCGCGGUCug----UCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 111031 | 0.66 | 0.786639 |
Target: 5'- aCGGCuUCAGCGCCc--CAGGCGaCCc -3' miRNA: 3'- -GUCGuAGUCGCGGucuGUCCGCcGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 226877 | 0.69 | 0.654741 |
Target: 5'- cCAGCGagGGCaGCUgcggGGGCAccacGGCGGCCAg -3' miRNA: 3'- -GUCGUagUCG-CGG----UCUGU----CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 167834 | 0.68 | 0.664523 |
Target: 5'- gAGCAggAGCgGCCAGGCcccccGCGGCCGc -3' miRNA: 3'- gUCGUagUCG-CGGUCUGuc---CGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 103335 | 0.7 | 0.576478 |
Target: 5'- -cGCGcCAGCGCCGuGCGGuaGGCCAg -3' miRNA: 3'- guCGUaGUCGCGGUcUGUCcgCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 27457 | 0.69 | 0.654741 |
Target: 5'- uCGGcCGUgAGCGCCAGGCuGGCcaGGuCCGu -3' miRNA: 3'- -GUC-GUAgUCGCGGUCUGuCCG--CC-GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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