miRNA display CGI


Results 21 - 40 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 99411 0.66 0.803953
Target:  5'- gCAGCGUCuGCucGUCgaagGGACAGuaGGCCAg -3'
miRNA:   3'- -GUCGUAGuCG--CGG----UCUGUCcgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 65775 0.66 0.803953
Target:  5'- -cGCAUCAcaccGcCGCCGGACAacuucGGCcGGCCc -3'
miRNA:   3'- guCGUAGU----C-GCGGUCUGU-----CCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 191016 0.66 0.803953
Target:  5'- -uGCA-CGGCGcCCAGccauuCGGGCGGCa- -3'
miRNA:   3'- guCGUaGUCGC-GGUCu----GUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 29728 0.66 0.803953
Target:  5'- gAGCcUCGGCGCgaCGGACAGGCaGGa-- -3'
miRNA:   3'- gUCGuAGUCGCG--GUCUGUCCG-CCggu -5'
14147 5' -60.2 NC_003521.1 + 148429 0.66 0.8031
Target:  5'- gGGCggCcGCGCCGGcggcuccAgGGGUGGCCGg -3'
miRNA:   3'- gUCGuaGuCGCGGUC-------UgUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 207935 0.66 0.795364
Target:  5'- gGGCA-CGGCGgCAGcACcGGCGGCgCGg -3'
miRNA:   3'- gUCGUaGUCGCgGUC-UGuCCGCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 99449 0.66 0.795364
Target:  5'- aAGCGguagGGCGCCAGACAGcGCuGGauCCGg -3'
miRNA:   3'- gUCGUag--UCGCGGUCUGUC-CG-CC--GGU- -5'
14147 5' -60.2 NC_003521.1 + 128434 0.66 0.795364
Target:  5'- uCGGCG-CAcuGCGCCAGcCAGGUGGaCGa -3'
miRNA:   3'- -GUCGUaGU--CGCGGUCuGUCCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 235129 0.66 0.795364
Target:  5'- cCGGUGaCGGCGCCcguuccccgcGGACGGGCGcCCGu -3'
miRNA:   3'- -GUCGUaGUCGCGG----------UCUGUCCGCcGGU- -5'
14147 5' -60.2 NC_003521.1 + 194276 0.66 0.795364
Target:  5'- uCAGCAccCGGCGCgAGGCccuGGUGcGCCu -3'
miRNA:   3'- -GUCGUa-GUCGCGgUCUGu--CCGC-CGGu -5'
14147 5' -60.2 NC_003521.1 + 55642 0.66 0.795364
Target:  5'- gGGCGUCA-CGCUccACAGGUGcGCCAc -3'
miRNA:   3'- gUCGUAGUcGCGGucUGUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 36885 0.66 0.795364
Target:  5'- gAGCGagGGCGUCAGGCAGccGUGGUgGa -3'
miRNA:   3'- gUCGUagUCGCGGUCUGUC--CGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 164436 0.66 0.795364
Target:  5'- -uGCuagCAGCGCCAccGCGGccGCGGCCGu -3'
miRNA:   3'- guCGua-GUCGCGGUc-UGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 111235 0.66 0.795364
Target:  5'- gAGCGUC-GCgGCCGGcGCGGcGCGGCgGa -3'
miRNA:   3'- gUCGUAGuCG-CGGUC-UGUC-CGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 58476 0.66 0.794497
Target:  5'- cCAGgGUCugccaauGGC-CCAGACAGGUGGUg- -3'
miRNA:   3'- -GUCgUAG-------UCGcGGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 74887 0.66 0.786639
Target:  5'- aCGGCGcugCuGCGCgAGACGguGGCGGCg- -3'
miRNA:   3'- -GUCGUa--GuCGCGgUCUGU--CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 111031 0.66 0.786639
Target:  5'- aCGGCuUCAGCGCCc--CAGGCGaCCc -3'
miRNA:   3'- -GUCGuAGUCGCGGucuGUCCGCcGGu -5'
14147 5' -60.2 NC_003521.1 + 145258 0.66 0.786639
Target:  5'- -uGCAg-GGCGCCuccucGGCcucGGCGGCCAg -3'
miRNA:   3'- guCGUagUCGCGGu----CUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 24415 0.66 0.786639
Target:  5'- gAGCA-UAGaaaGCCAGACGGcGCaggGGCCGg -3'
miRNA:   3'- gUCGUaGUCg--CGGUCUGUC-CG---CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 70234 0.66 0.786639
Target:  5'- -cGCAgCAGgGCUAGGCAgGGCGaGCUg -3'
miRNA:   3'- guCGUaGUCgCGGUCUGU-CCGC-CGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.