miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 145666 0.67 0.978744
Target:  5'- -uGCCcuCGGCCCg--CGAGUuCCUGCu -3'
miRNA:   3'- guUGGu-GCUGGGguaGCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 80260 0.67 0.976427
Target:  5'- aAACCACGACCaCCA-CuAGUAUC-GCg -3'
miRNA:   3'- gUUGGUGCUGG-GGUaGcUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 200444 0.67 0.976427
Target:  5'- -cGCCACGACgCCgaCAUCGuggagaAGgcCCUGCg -3'
miRNA:   3'- guUGGUGCUG-GG--GUAGC------UCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 171313 0.67 0.978744
Target:  5'- gGugCugGGCCUCAaCGcg-GCCUGCg -3'
miRNA:   3'- gUugGugCUGGGGUaGCucaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 118939 0.67 0.978744
Target:  5'- cCAGCCAgGAgCCCAugUCGcuGUACgUGUa -3'
miRNA:   3'- -GUUGGUgCUgGGGU--AGCu-CAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 137270 0.67 0.979622
Target:  5'- gCGACCugGGCCCCGUcauccccacgcacgcCuccaugagcGAGUucgcgcGCCUGCu -3'
miRNA:   3'- -GUUGGugCUGGGGUA---------------G---------CUCA------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 140616 0.67 0.980473
Target:  5'- cCGGCCuACGACCUgCAgcgguacacggcCGAGaGCCUGCg -3'
miRNA:   3'- -GUUGG-UGCUGGG-GUa-----------GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 68810 0.67 0.980889
Target:  5'- uGAgCAUGGCCaucgaggcggCCAUCGAGgACCUGa -3'
miRNA:   3'- gUUgGUGCUGG----------GGUAGCUCaUGGACg -5'
14148 3' -53.8 NC_003521.1 + 105258 0.67 0.980889
Target:  5'- gCGugCGCGACCCCcaggcgGUUGAGUuCCgucaacaGCg -3'
miRNA:   3'- -GUugGUGCUGGGG------UAGCUCAuGGa------CG- -5'
14148 3' -53.8 NC_003521.1 + 21422 0.67 0.982867
Target:  5'- gCAGCUAcuCGGCCUCGUCGugcccGUcGCCUGUc -3'
miRNA:   3'- -GUUGGU--GCUGGGGUAGCu----CA-UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 131197 0.67 0.976427
Target:  5'- gAGCgGCGGCUcaucuucaUCAUCGAGacggGCCUGUg -3'
miRNA:   3'- gUUGgUGCUGG--------GGUAGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 183182 0.67 0.976185
Target:  5'- -cGCCGucccgucccguuuCGGCCCCcgUGAcGUGCCUGg -3'
miRNA:   3'- guUGGU-------------GCUGGGGuaGCU-CAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 43494 0.67 0.978744
Target:  5'- uGGCCGCGGCggccaacaUCCGUC-AGcGCCUGCc -3'
miRNA:   3'- gUUGGUGCUG--------GGGUAGcUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 116843 0.67 0.976427
Target:  5'- aGACCugACGGCCgCCGaccgCGAcgACCUGCg -3'
miRNA:   3'- gUUGG--UGCUGG-GGUa---GCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 66615 0.67 0.976427
Target:  5'- cCGACCcgcGCGACCCCAacgugggCGcGUcgcACCUGUc -3'
miRNA:   3'- -GUUGG---UGCUGGGGUa------GCuCA---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 104935 0.67 0.976185
Target:  5'- aCGAgCGCGACgCCGUCGGuuacucgaaggucGUGCC-GCg -3'
miRNA:   3'- -GUUgGUGCUGgGGUAGCU-------------CAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 60617 0.67 0.973929
Target:  5'- -cACCACcaACgCCGagcgCGAGUACCUGUa -3'
miRNA:   3'- guUGGUGc-UGgGGUa---GCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 85655 0.67 0.973929
Target:  5'- gCAGCCGCGGCCgCCAgcuguucCGA--GCCgGCg -3'
miRNA:   3'- -GUUGGUGCUGG-GGUa------GCUcaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 77430 0.67 0.973929
Target:  5'- gGGCCACGGCCgagaggaugccgCCGUUG-GUGCCcGUg -3'
miRNA:   3'- gUUGGUGCUGG------------GGUAGCuCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 43190 0.67 0.973929
Target:  5'- -cACCGCGACCUgugcaacgugcuCAUCG---GCCUGCu -3'
miRNA:   3'- guUGGUGCUGGG------------GUAGCucaUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.