miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 66615 0.67 0.976427
Target:  5'- cCGACCcgcGCGACCCCAacgugggCGcGUcgcACCUGUc -3'
miRNA:   3'- -GUUGG---UGCUGGGGUa------GCuCA---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 104935 0.67 0.976185
Target:  5'- aCGAgCGCGACgCCGUCGGuuacucgaaggucGUGCC-GCg -3'
miRNA:   3'- -GUUgGUGCUGgGGUAGCU-------------CAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 60617 0.67 0.973929
Target:  5'- -cACCACcaACgCCGagcgCGAGUACCUGUa -3'
miRNA:   3'- guUGGUGc-UGgGGUa---GCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 85655 0.67 0.973929
Target:  5'- gCAGCCGCGGCCgCCAgcuguucCGA--GCCgGCg -3'
miRNA:   3'- -GUUGGUGCUGG-GGUa------GCUcaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 77430 0.67 0.973929
Target:  5'- gGGCCACGGCCgagaggaugccgCCGUUG-GUGCCcGUg -3'
miRNA:   3'- gUUGGUGCUGG------------GGUAGCuCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 183182 0.67 0.976185
Target:  5'- -cGCCGucccgucccguuuCGGCCCCcgUGAcGUGCCUGg -3'
miRNA:   3'- guUGGU-------------GCUGGGGuaGCU-CAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 2355 0.68 0.954817
Target:  5'- gGGCCGCGucuccGCCCCGcccgcCGAGgccgcCCUGCg -3'
miRNA:   3'- gUUGGUGC-----UGGGGUa----GCUCau---GGACG- -5'
14148 3' -53.8 NC_003521.1 + 17436 0.68 0.962011
Target:  5'- ---aCACGGCCCgCGUCGGGgcGCC-GCg -3'
miRNA:   3'- guugGUGCUGGG-GUAGCUCa-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 131269 0.68 0.958521
Target:  5'- cUAGCCgACGACCaCCA-CGAaUACCUGa -3'
miRNA:   3'- -GUUGG-UGCUGG-GGUaGCUcAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 118132 0.68 0.962011
Target:  5'- aCAACCGacCGGCCCCGcagcugUCG-GUGCUggGCg -3'
miRNA:   3'- -GUUGGU--GCUGGGGU------AGCuCAUGGa-CG- -5'
14148 3' -53.8 NC_003521.1 + 166677 0.68 0.968367
Target:  5'- -cACCugGGCCCCGUggcgcgccaCGucGU-CCUGCa -3'
miRNA:   3'- guUGGugCUGGGGUA---------GCu-CAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 215047 0.68 0.962011
Target:  5'- gCAGCCGCGuggaGCCCC--UGGGcUGCCUGg -3'
miRNA:   3'- -GUUGGUGC----UGGGGuaGCUC-AUGGACg -5'
14148 3' -53.8 NC_003521.1 + 164998 0.68 0.971245
Target:  5'- aGAUCAuCGAUCCCAgCGAGgagGCC-GCg -3'
miRNA:   3'- gUUGGU-GCUGGGGUaGCUCa--UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 27876 0.68 0.971245
Target:  5'- gGACCuCGACCgCAUgGAGgcggGCUUGUc -3'
miRNA:   3'- gUUGGuGCUGGgGUAgCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 202635 0.68 0.970966
Target:  5'- uCGACCgcgagcacugggaGCGGCCCCGcUGGGacgcCCUGCa -3'
miRNA:   3'- -GUUGG-------------UGCUGGGGUaGCUCau--GGACG- -5'
14148 3' -53.8 NC_003521.1 + 129720 0.68 0.968367
Target:  5'- cCGGCCGCGG-CCCGUCGAc-GCgaGCg -3'
miRNA:   3'- -GUUGGUGCUgGGGUAGCUcaUGgaCG- -5'
14148 3' -53.8 NC_003521.1 + 114402 0.68 0.968367
Target:  5'- uCGACCGCcuGGCCgCCAUCGcgcAGggccgagACCUGUg -3'
miRNA:   3'- -GUUGGUG--CUGG-GGUAGC---UCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 112818 0.68 0.968367
Target:  5'- aCGGCCGCGACCCCc-CGGauuCCgugGCg -3'
miRNA:   3'- -GUUGGUGCUGGGGuaGCUcauGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 21140 0.68 0.971245
Target:  5'- -cGCCAgaGAUCCCA--GAGUACCgGCa -3'
miRNA:   3'- guUGGUg-CUGGGGUagCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 16607 0.68 0.965291
Target:  5'- gGACCGCGACUacgggCGUC-AGUACCgcugGCu -3'
miRNA:   3'- gUUGGUGCUGGg----GUAGcUCAUGGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.