Results 101 - 120 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14148 | 3' | -53.8 | NC_003521.1 | + | 215047 | 0.68 | 0.962011 |
Target: 5'- gCAGCCGCGuggaGCCCC--UGGGcUGCCUGg -3' miRNA: 3'- -GUUGGUGC----UGGGGuaGCUC-AUGGACg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 153177 | 0.68 | 0.962011 |
Target: 5'- gGGCUGCGcCUCCAgccugugCGAG-GCCUGCg -3' miRNA: 3'- gUUGGUGCuGGGGUa------GCUCaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 184391 | 0.68 | 0.958521 |
Target: 5'- gGGCCACGaggcgGCCUucgaCcgCGAGUACCgGCg -3' miRNA: 3'- gUUGGUGC-----UGGG----GuaGCUCAUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 44147 | 0.68 | 0.962011 |
Target: 5'- aCAGCCGCGACaUCCuggUGG--ACCUGCg -3' miRNA: 3'- -GUUGGUGCUG-GGGua-GCUcaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 150497 | 0.68 | 0.965291 |
Target: 5'- uCAGCUuuuACGGCgCCggCGGGgcCCUGCu -3' miRNA: 3'- -GUUGG---UGCUGgGGuaGCUCauGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 211274 | 0.68 | 0.965291 |
Target: 5'- gAGCCACGG-CCUAUCGuGGUACggccaaguCUGCa -3' miRNA: 3'- gUUGGUGCUgGGGUAGC-UCAUG--------GACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 170680 | 0.68 | 0.958521 |
Target: 5'- gCAGCCGCGcucGCCgCAgcUCGAGgcCCUGa -3' miRNA: 3'- -GUUGGUGC---UGGgGU--AGCUCauGGACg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 2355 | 0.68 | 0.954817 |
Target: 5'- gGGCCGCGucuccGCCCCGcccgcCGAGgccgcCCUGCg -3' miRNA: 3'- gUUGGUGC-----UGGGGUa----GCUCau---GGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 114402 | 0.68 | 0.968367 |
Target: 5'- uCGACCGCcuGGCCgCCAUCGcgcAGggccgagACCUGUg -3' miRNA: 3'- -GUUGGUG--CUGG-GGUAGC---UCa------UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 131269 | 0.68 | 0.958521 |
Target: 5'- cUAGCCgACGACCaCCA-CGAaUACCUGa -3' miRNA: 3'- -GUUGG-UGCUGG-GGUaGCUcAUGGACg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 21140 | 0.68 | 0.971245 |
Target: 5'- -cGCCAgaGAUCCCA--GAGUACCgGCa -3' miRNA: 3'- guUGGUg-CUGGGGUagCUCAUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 164998 | 0.68 | 0.971245 |
Target: 5'- aGAUCAuCGAUCCCAgCGAGgagGCC-GCg -3' miRNA: 3'- gUUGGU-GCUGGGGUaGCUCa--UGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 27876 | 0.68 | 0.971245 |
Target: 5'- gGACCuCGACCgCAUgGAGgcggGCUUGUc -3' miRNA: 3'- gUUGGuGCUGGgGUAgCUCa---UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 202635 | 0.68 | 0.970966 |
Target: 5'- uCGACCgcgagcacugggaGCGGCCCCGcUGGGacgcCCUGCa -3' miRNA: 3'- -GUUGG-------------UGCUGGGGUaGCUCau--GGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 129720 | 0.68 | 0.968367 |
Target: 5'- cCGGCCGCGG-CCCGUCGAc-GCgaGCg -3' miRNA: 3'- -GUUGGUGCUgGGGUAGCUcaUGgaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 112818 | 0.68 | 0.968367 |
Target: 5'- aCGGCCGCGACCCCc-CGGauuCCgugGCg -3' miRNA: 3'- -GUUGGUGCUGGGGuaGCUcauGGa--CG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 236702 | 0.68 | 0.968367 |
Target: 5'- ----aACGGCCUCGUCugguugGGGUGCCUGUu -3' miRNA: 3'- guuggUGCUGGGGUAG------CUCAUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 68449 | 0.68 | 0.968367 |
Target: 5'- uCAACCGCGugCCggucagCAUCGAcuuUCUGCg -3' miRNA: 3'- -GUUGGUGCugGG------GUAGCUcauGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 67290 | 0.68 | 0.968069 |
Target: 5'- aCAGCCGCugcgccuGACgCCCGaCGAGU-UCUGCa -3' miRNA: 3'- -GUUGGUG-------CUG-GGGUaGCUCAuGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 136752 | 0.69 | 0.950896 |
Target: 5'- -uGCCGCG-CCCgcUCGAGcugcuggccUACCUGCg -3' miRNA: 3'- guUGGUGCuGGGguAGCUC---------AUGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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