miRNA display CGI


Results 121 - 140 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 92039 0.69 0.950896
Target:  5'- gCAGCCGCGGCUCCucggcgCGAccGCCgaggGCa -3'
miRNA:   3'- -GUUGGUGCUGGGGua----GCUcaUGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 167987 0.69 0.946754
Target:  5'- -cGCCGCGcCCaggCCGUCGcGGUgaGCCUGCu -3'
miRNA:   3'- guUGGUGCuGG---GGUAGC-UCA--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 223821 0.69 0.950896
Target:  5'- -cGCCGCcGCCaCCG-CGGGcGCCUGCu -3'
miRNA:   3'- guUGGUGcUGG-GGUaGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 136752 0.69 0.950896
Target:  5'- -uGCCGCG-CCCgcUCGAGcugcuggccUACCUGCg -3'
miRNA:   3'- guUGGUGCuGGGguAGCUC---------AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 42972 0.69 0.950896
Target:  5'- gCGACCcgcCGGCgCCCAcCGAcgACCUGCa -3'
miRNA:   3'- -GUUGGu--GCUG-GGGUaGCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 11834 0.69 0.932975
Target:  5'- cCAuCCACGGCUggUAUCGGG-ACCUGCg -3'
miRNA:   3'- -GUuGGUGCUGGg-GUAGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 202583 0.69 0.937795
Target:  5'- gGGCCGCGucucGCCCCGcccgcCGAGgccgcCCUGCg -3'
miRNA:   3'- gUUGGUGC----UGGGGUa----GCUCau---GGACG- -5'
14148 3' -53.8 NC_003521.1 + 56283 0.69 0.942387
Target:  5'- gGACuCGCaGGCCagCAUCGAGUACUUGa -3'
miRNA:   3'- gUUG-GUG-CUGGg-GUAGCUCAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 3673 0.69 0.950896
Target:  5'- gCGGCCGgGACCCuCGUCGGaUGCUgacGCg -3'
miRNA:   3'- -GUUGGUgCUGGG-GUAGCUcAUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 144123 0.69 0.946754
Target:  5'- -cGCCGCGGCCUgGaCGAGgugcGCCUGg -3'
miRNA:   3'- guUGGUGCUGGGgUaGCUCa---UGGACg -5'
14148 3' -53.8 NC_003521.1 + 223613 0.69 0.952491
Target:  5'- aGACCuCGGCCuCCGUCuGGUaggcguccacgaugcGCCUGCc -3'
miRNA:   3'- gUUGGuGCUGG-GGUAGcUCA---------------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 19639 0.69 0.932975
Target:  5'- -uGCCugAUGAUCuCCAUCGuGUGCCUGg -3'
miRNA:   3'- guUGG--UGCUGG-GGUAGCuCAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 224592 0.69 0.946754
Target:  5'- uGGCUcCGAaaCCGUCGuAGUACCUGUc -3'
miRNA:   3'- gUUGGuGCUggGGUAGC-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 221283 0.69 0.942387
Target:  5'- gCGGCCAaGACCCCGauccUCGGGU-CCgaggGCc -3'
miRNA:   3'- -GUUGGUgCUGGGGU----AGCUCAuGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 175674 0.69 0.942387
Target:  5'- --uCCACGGCCCgugCGAGguccGCUUGCg -3'
miRNA:   3'- guuGGUGCUGGGguaGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 20509 0.69 0.942387
Target:  5'- cCGugCugGuCCCCAUCGuGUGCaUGUu -3'
miRNA:   3'- -GUugGugCuGGGGUAGCuCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 138908 0.69 0.937795
Target:  5'- -cACCACGGCCgC-UCG-GUgcGCCUGCc -3'
miRNA:   3'- guUGGUGCUGGgGuAGCuCA--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 186710 0.69 0.932975
Target:  5'- aCGACgACGGCUCCGgucUgGAGaacgACCUGCu -3'
miRNA:   3'- -GUUGgUGCUGGGGU---AgCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 118667 0.69 0.932975
Target:  5'- aCGuCCugGGCCCCAucUCGGGgcACgUGCu -3'
miRNA:   3'- -GUuGGugCUGGGGU--AGCUCa-UGgACG- -5'
14148 3' -53.8 NC_003521.1 + 208888 0.69 0.932975
Target:  5'- --uCCugGACCCCGaggagcgCGAGgucaucgcgcgcUGCCUGCc -3'
miRNA:   3'- guuGGugCUGGGGUa------GCUC------------AUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.