miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 112702 0.7 0.922648
Target:  5'- gGGCCGCccucgGACCCCAUgaUGcAGcGCCUGCu -3'
miRNA:   3'- gUUGGUG-----CUGGGGUA--GC-UCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 122206 0.7 0.90361
Target:  5'- --cUCGCGACUCCAUgcugccugcgagcgCGGGUGCCgGCg -3'
miRNA:   3'- guuGGUGCUGGGGUA--------------GCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 152514 0.7 0.905443
Target:  5'- aGACC-CGcauCCUCAUCGAGgcggcCCUGCg -3'
miRNA:   3'- gUUGGuGCu--GGGGUAGCUCau---GGACG- -5'
14148 3' -53.8 NC_003521.1 + 66702 0.7 0.905443
Target:  5'- gGGCUGCGACCCCc-UGAGggUCUGCu -3'
miRNA:   3'- gUUGGUGCUGGGGuaGCUCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 92727 0.7 0.922648
Target:  5'- cCAcCCGCGACCuCCGgacCGucUGCCUGCc -3'
miRNA:   3'- -GUuGGUGCUGG-GGUa--GCucAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 148731 0.7 0.922648
Target:  5'- aGGCCucCGugCCCAUCGugcAGUGCCUc- -3'
miRNA:   3'- gUUGGu-GCugGGGUAGC---UCAUGGAcg -5'
14148 3' -53.8 NC_003521.1 + 201266 0.7 0.91714
Target:  5'- gCAGCCAgaUGGCCggCGUCGGGgccaccgACCUGCg -3'
miRNA:   3'- -GUUGGU--GCUGGg-GUAGCUCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 20310 0.7 0.911405
Target:  5'- aGACCugGACCuCCA-CGGGcAUCUGUc -3'
miRNA:   3'- gUUGGugCUGG-GGUaGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 11834 0.69 0.932975
Target:  5'- cCAuCCACGGCUggUAUCGGG-ACCUGCg -3'
miRNA:   3'- -GUuGGUGCUGGg-GUAGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 56283 0.69 0.942387
Target:  5'- gGACuCGCaGGCCagCAUCGAGUACUUGa -3'
miRNA:   3'- gUUG-GUG-CUGGg-GUAGCUCAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 79695 0.69 0.942387
Target:  5'- --cCCGCGGCCgCGUUGAu--CCUGCa -3'
miRNA:   3'- guuGGUGCUGGgGUAGCUcauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 144123 0.69 0.946754
Target:  5'- -cGCCGCGGCCUgGaCGAGgugcGCCUGg -3'
miRNA:   3'- guUGGUGCUGGGgUaGCUCa---UGGACg -5'
14148 3' -53.8 NC_003521.1 + 163114 0.69 0.946754
Target:  5'- -cGCCACGACCaCCGccgccuccUCGGGcAUCUGUc -3'
miRNA:   3'- guUGGUGCUGG-GGU--------AGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 3673 0.69 0.950896
Target:  5'- gCGGCCGgGACCCuCGUCGGaUGCUgacGCg -3'
miRNA:   3'- -GUUGGUgCUGGG-GUAGCUcAUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 42972 0.69 0.950896
Target:  5'- gCGACCcgcCGGCgCCCAcCGAcgACCUGCa -3'
miRNA:   3'- -GUUGGu--GCUG-GGGUaGCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 136752 0.69 0.950896
Target:  5'- -uGCCGCG-CCCgcUCGAGcugcuggccUACCUGCg -3'
miRNA:   3'- guUGGUGCuGGGguAGCUC---------AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 202583 0.69 0.937795
Target:  5'- gGGCCGCGucucGCCCCGcccgcCGAGgccgcCCUGCg -3'
miRNA:   3'- gUUGGUGC----UGGGGUa----GCUCau---GGACG- -5'
14148 3' -53.8 NC_003521.1 + 223821 0.69 0.950896
Target:  5'- -cGCCGCcGCCaCCG-CGGGcGCCUGCu -3'
miRNA:   3'- guUGGUGcUGG-GGUaGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 223613 0.69 0.952491
Target:  5'- aGACCuCGGCCuCCGUCuGGUaggcguccacgaugcGCCUGCc -3'
miRNA:   3'- gUUGGuGCUGG-GGUAGcUCA---------------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 19639 0.69 0.932975
Target:  5'- -uGCCugAUGAUCuCCAUCGuGUGCCUGg -3'
miRNA:   3'- guUGG--UGCUGG-GGUAGCuCAUGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.