miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 167987 0.69 0.946754
Target:  5'- -cGCCGCGcCCaggCCGUCGcGGUgaGCCUGCu -3'
miRNA:   3'- guUGGUGCuGG---GGUAGC-UCA--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 224592 0.69 0.946754
Target:  5'- uGGCUcCGAaaCCGUCGuAGUACCUGUc -3'
miRNA:   3'- gUUGGuGCUggGGUAGC-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 221283 0.69 0.942387
Target:  5'- gCGGCCAaGACCCCGauccUCGGGU-CCgaggGCc -3'
miRNA:   3'- -GUUGGUgCUGGGGU----AGCUCAuGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 175674 0.69 0.942387
Target:  5'- --uCCACGGCCCgugCGAGguccGCUUGCg -3'
miRNA:   3'- guuGGUGCUGGGguaGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 138908 0.69 0.937795
Target:  5'- -cACCACGGCCgC-UCG-GUgcGCCUGCc -3'
miRNA:   3'- guUGGUGCUGGgGuAGCuCA--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 223613 0.69 0.952491
Target:  5'- aGACCuCGGCCuCCGUCuGGUaggcguccacgaugcGCCUGCc -3'
miRNA:   3'- gUUGGuGCUGG-GGUAGcUCA---------------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 223821 0.69 0.950896
Target:  5'- -cGCCGCcGCCaCCG-CGGGcGCCUGCu -3'
miRNA:   3'- guUGGUGcUGG-GGUaGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 136752 0.69 0.950896
Target:  5'- -uGCCGCG-CCCgcUCGAGcugcuggccUACCUGCg -3'
miRNA:   3'- guUGGUGCuGGGguAGCUC---------AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 42972 0.69 0.950896
Target:  5'- gCGACCcgcCGGCgCCCAcCGAcgACCUGCa -3'
miRNA:   3'- -GUUGGu--GCUG-GGGUaGCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 163114 0.69 0.946754
Target:  5'- -cGCCACGACCaCCGccgccuccUCGGGcAUCUGUc -3'
miRNA:   3'- guUGGUGCUGG-GGU--------AGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 68449 0.68 0.968367
Target:  5'- uCAACCGCGugCCggucagCAUCGAcuuUCUGCg -3'
miRNA:   3'- -GUUGGUGCugGG------GUAGCUcauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 21140 0.68 0.971245
Target:  5'- -cGCCAgaGAUCCCA--GAGUACCgGCa -3'
miRNA:   3'- guUGGUg-CUGGGGUagCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 164998 0.68 0.971245
Target:  5'- aGAUCAuCGAUCCCAgCGAGgagGCC-GCg -3'
miRNA:   3'- gUUGGU-GCUGGGGUaGCUCa--UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 23945 0.68 0.958521
Target:  5'- -uGCgACGACCUCAUCG-GUcucGCCcGCa -3'
miRNA:   3'- guUGgUGCUGGGGUAGCuCA---UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 27876 0.68 0.971245
Target:  5'- gGACCuCGACCgCAUgGAGgcggGCUUGUc -3'
miRNA:   3'- gUUGGuGCUGGgGUAgCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 202635 0.68 0.970966
Target:  5'- uCGACCgcgagcacugggaGCGGCCCCGcUGGGacgcCCUGCa -3'
miRNA:   3'- -GUUGG-------------UGCUGGGGUaGCUCau--GGACG- -5'
14148 3' -53.8 NC_003521.1 + 129720 0.68 0.968367
Target:  5'- cCGGCCGCGG-CCCGUCGAc-GCgaGCg -3'
miRNA:   3'- -GUUGGUGCUgGGGUAGCUcaUGgaCG- -5'
14148 3' -53.8 NC_003521.1 + 114402 0.68 0.968367
Target:  5'- uCGACCGCcuGGCCgCCAUCGcgcAGggccgagACCUGUg -3'
miRNA:   3'- -GUUGGUG--CUGG-GGUAGC---UCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 112818 0.68 0.968367
Target:  5'- aCGGCCGCGACCCCc-CGGauuCCgugGCg -3'
miRNA:   3'- -GUUGGUGCUGGGGuaGCUcauGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 236702 0.68 0.968367
Target:  5'- ----aACGGCCUCGUCugguugGGGUGCCUGUu -3'
miRNA:   3'- guuggUGCUGGGGUAG------CUCAUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.