miRNA display CGI


Results 101 - 120 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 16607 0.68 0.965291
Target:  5'- gGACCGCGACUacgggCGUC-AGUACCgcugGCu -3'
miRNA:   3'- gUUGGUGCUGGg----GUAGcUCAUGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 166677 0.68 0.968367
Target:  5'- -cACCugGGCCCCGUggcgcgccaCGucGU-CCUGCa -3'
miRNA:   3'- guUGGugCUGGGGUA---------GCu-CAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 184391 0.68 0.958521
Target:  5'- gGGCCACGaggcgGCCUucgaCcgCGAGUACCgGCg -3'
miRNA:   3'- gUUGGUGC-----UGGG----GuaGCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 216891 0.67 0.978744
Target:  5'- aGGCCAUccaGGCCaCCAgcuugucgugCGAGU-CCUGCg -3'
miRNA:   3'- gUUGGUG---CUGG-GGUa---------GCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 77430 0.67 0.973929
Target:  5'- gGGCCACGGCCgagaggaugccgCCGUUG-GUGCCcGUg -3'
miRNA:   3'- gUUGGUGCUGG------------GGUAGCuCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 85655 0.67 0.973929
Target:  5'- gCAGCCGCGGCCgCCAgcuguucCGA--GCCgGCg -3'
miRNA:   3'- -GUUGGUGCUGG-GGUa------GCUcaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 60617 0.67 0.973929
Target:  5'- -cACCACcaACgCCGagcgCGAGUACCUGUa -3'
miRNA:   3'- guUGGUGc-UGgGGUa---GCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 104935 0.67 0.976185
Target:  5'- aCGAgCGCGACgCCGUCGGuuacucgaaggucGUGCC-GCg -3'
miRNA:   3'- -GUUgGUGCUGgGGUAGCU-------------CAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 66615 0.67 0.976427
Target:  5'- cCGACCcgcGCGACCCCAacgugggCGcGUcgcACCUGUc -3'
miRNA:   3'- -GUUGG---UGCUGGGGUa------GCuCA---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 73727 0.67 0.982867
Target:  5'- gGGCCGCGACCgCuUCGuGcAgCUGCu -3'
miRNA:   3'- gUUGGUGCUGGgGuAGCuCaUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 114912 0.67 0.980889
Target:  5'- gGACCugGACguguCCC-UCGAGcGgCUGCu -3'
miRNA:   3'- gUUGGugCUG----GGGuAGCUCaUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 150339 0.67 0.980889
Target:  5'- ---aCACGGCCCCGUcucggcCGAGgucUGCgUGCg -3'
miRNA:   3'- guugGUGCUGGGGUA------GCUC---AUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 63654 0.67 0.980889
Target:  5'- gCAACCcCGugCCCGugaaccagagcuUCGuGUGUCUGCg -3'
miRNA:   3'- -GUUGGuGCugGGGU------------AGCuCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 59613 0.67 0.980889
Target:  5'- uGGCgGCGGCCCCggCGGcgACCgcgGCu -3'
miRNA:   3'- gUUGgUGCUGGGGuaGCUcaUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 12125 0.67 0.978744
Target:  5'- -cGCCGCG-CUCCuUCGGGUGCg-GCg -3'
miRNA:   3'- guUGGUGCuGGGGuAGCUCAUGgaCG- -5'
14148 3' -53.8 NC_003521.1 + 43190 0.67 0.973929
Target:  5'- -cACCGCGACCUgugcaacgugcuCAUCG---GCCUGCu -3'
miRNA:   3'- guUGGUGCUGGG------------GUAGCucaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 145666 0.67 0.978744
Target:  5'- -uGCCcuCGGCCCg--CGAGUuCCUGCu -3'
miRNA:   3'- guUGGu-GCUGGGguaGCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 43494 0.67 0.978744
Target:  5'- uGGCCGCGGCggccaacaUCCGUC-AGcGCCUGCc -3'
miRNA:   3'- gUUGGUGCUG--------GGGUAGcUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 116843 0.67 0.976427
Target:  5'- aGACCugACGGCCgCCGaccgCGAcgACCUGCg -3'
miRNA:   3'- gUUGG--UGCUGG-GGUa---GCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 162916 0.67 0.980889
Target:  5'- uGACgGgGACCUCAagGAGaACCUGUu -3'
miRNA:   3'- gUUGgUgCUGGGGUagCUCaUGGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.