miRNA display CGI


Results 121 - 140 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 216891 0.67 0.978744
Target:  5'- aGGCCAUccaGGCCaCCAgcuugucgugCGAGU-CCUGCg -3'
miRNA:   3'- gUUGGUG---CUGG-GGUa---------GCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 137270 0.67 0.979622
Target:  5'- gCGACCugGGCCCCGUcauccccacgcacgcCuccaugagcGAGUucgcgcGCCUGCu -3'
miRNA:   3'- -GUUGGugCUGGGGUA---------------G---------CUCA------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 140616 0.67 0.980473
Target:  5'- cCGGCCuACGACCUgCAgcgguacacggcCGAGaGCCUGCg -3'
miRNA:   3'- -GUUGG-UGCUGGG-GUa-----------GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 8617 0.67 0.980889
Target:  5'- aCAGCCACcACCaCCcgCGGGgGCCcaugGCg -3'
miRNA:   3'- -GUUGGUGcUGG-GGuaGCUCaUGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 63654 0.67 0.980889
Target:  5'- gCAACCcCGugCCCGugaaccagagcuUCGuGUGUCUGCg -3'
miRNA:   3'- -GUUGGuGCugGGGU------------AGCuCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 105258 0.67 0.980889
Target:  5'- gCGugCGCGACCCCcaggcgGUUGAGUuCCgucaacaGCg -3'
miRNA:   3'- -GUugGUGCUGGGG------UAGCUCAuGGa------CG- -5'
14148 3' -53.8 NC_003521.1 + 14338 0.67 0.980889
Target:  5'- -cGCCuACGACaCCCG-CGAccaGUACCUGg -3'
miRNA:   3'- guUGG-UGCUG-GGGUaGCU---CAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 212716 0.67 0.980889
Target:  5'- gGGCCuCGAUCUUGggCGAGcGCCUGCu -3'
miRNA:   3'- gUUGGuGCUGGGGUa-GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 68810 0.67 0.980889
Target:  5'- uGAgCAUGGCCaucgaggcggCCAUCGAGgACCUGa -3'
miRNA:   3'- gUUgGUGCUGG----------GGUAGCUCaUGGACg -5'
14148 3' -53.8 NC_003521.1 + 59613 0.67 0.980889
Target:  5'- uGGCgGCGGCCCCggCGGcgACCgcgGCu -3'
miRNA:   3'- gUUGgUGCUGGGGuaGCUcaUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 162916 0.67 0.980889
Target:  5'- uGACgGgGACCUCAagGAGaACCUGUu -3'
miRNA:   3'- gUUGgUgCUGGGGUagCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 150339 0.67 0.980889
Target:  5'- ---aCACGGCCCCGUcucggcCGAGgucUGCgUGCg -3'
miRNA:   3'- guugGUGCUGGGGUA------GCUC---AUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 114912 0.67 0.980889
Target:  5'- gGACCugGACguguCCC-UCGAGcGgCUGCu -3'
miRNA:   3'- gUUGGugCUG----GGGuAGCUCaUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 21422 0.67 0.982867
Target:  5'- gCAGCUAcuCGGCCUCGUCGugcccGUcGCCUGUc -3'
miRNA:   3'- -GUUGGU--GCUGGGGUAGCu----CA-UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 160266 0.67 0.982867
Target:  5'- gGACUcgACGACCUCAU-GAGcgGCCUGg -3'
miRNA:   3'- gUUGG--UGCUGGGGUAgCUCa-UGGACg -5'
14148 3' -53.8 NC_003521.1 + 154227 0.67 0.982867
Target:  5'- -cACCACGAgcgcuucuuCCCCGgcugCGGcGUGCCcUGCc -3'
miRNA:   3'- guUGGUGCU---------GGGGUa---GCU-CAUGG-ACG- -5'
14148 3' -53.8 NC_003521.1 + 17938 0.67 0.982867
Target:  5'- gUAGCCAgCGACCUCAaggucuUCGccAGaacgGCCUGCu -3'
miRNA:   3'- -GUUGGU-GCUGGGGU------AGC--UCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 73727 0.67 0.982867
Target:  5'- gGGCCGCGACCgCuUCGuGcAgCUGCu -3'
miRNA:   3'- gUUGGUGCUGGgGuAGCuCaUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 201392 0.66 0.984687
Target:  5'- gAGCCACGGCgCCGccuaCGGGacuggacgGCCUGUg -3'
miRNA:   3'- gUUGGUGCUGgGGUa---GCUCa-------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 103940 0.66 0.984687
Target:  5'- uCGACCGCGAacaccggcgccaCCCgCcgCGAGU-CCgUGCa -3'
miRNA:   3'- -GUUGGUGCU------------GGG-GuaGCUCAuGG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.