Results 81 - 100 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14148 | 3' | -53.8 | NC_003521.1 | + | 104935 | 0.67 | 0.976185 |
Target: 5'- aCGAgCGCGACgCCGUCGGuuacucgaaggucGUGCC-GCg -3' miRNA: 3'- -GUUgGUGCUGgGGUAGCU-------------CAUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 183182 | 0.67 | 0.976185 |
Target: 5'- -cGCCGucccgucccguuuCGGCCCCcgUGAcGUGCCUGg -3' miRNA: 3'- guUGGU-------------GCUGGGGuaGCU-CAUGGACg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 60617 | 0.67 | 0.973929 |
Target: 5'- -cACCACcaACgCCGagcgCGAGUACCUGUa -3' miRNA: 3'- guUGGUGc-UGgGGUa---GCUCAUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 85655 | 0.67 | 0.973929 |
Target: 5'- gCAGCCGCGGCCgCCAgcuguucCGA--GCCgGCg -3' miRNA: 3'- -GUUGGUGCUGG-GGUa------GCUcaUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 77430 | 0.67 | 0.973929 |
Target: 5'- gGGCCACGGCCgagaggaugccgCCGUUG-GUGCCcGUg -3' miRNA: 3'- gUUGGUGCUGG------------GGUAGCuCAUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 43190 | 0.67 | 0.973929 |
Target: 5'- -cACCGCGACCUgugcaacgugcuCAUCG---GCCUGCu -3' miRNA: 3'- guUGGUGCUGGG------------GUAGCucaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 21140 | 0.68 | 0.971245 |
Target: 5'- -cGCCAgaGAUCCCA--GAGUACCgGCa -3' miRNA: 3'- guUGGUg-CUGGGGUagCUCAUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 164998 | 0.68 | 0.971245 |
Target: 5'- aGAUCAuCGAUCCCAgCGAGgagGCC-GCg -3' miRNA: 3'- gUUGGU-GCUGGGGUaGCUCa--UGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 27876 | 0.68 | 0.971245 |
Target: 5'- gGACCuCGACCgCAUgGAGgcggGCUUGUc -3' miRNA: 3'- gUUGGuGCUGGgGUAgCUCa---UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 163732 | 0.68 | 0.971245 |
Target: 5'- -uGCCGCGACCCCAUgCGccgcaugCUGCu -3' miRNA: 3'- guUGGUGCUGGGGUA-GCucaug--GACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 2408 | 0.68 | 0.970966 |
Target: 5'- uCGACCgcgagcacugggaGCGGCCCCGcUGGGacgcCCUGCa -3' miRNA: 3'- -GUUGG-------------UGCUGGGGUaGCUCau--GGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 202635 | 0.68 | 0.970966 |
Target: 5'- uCGACCgcgagcacugggaGCGGCCCCGcUGGGacgcCCUGCa -3' miRNA: 3'- -GUUGG-------------UGCUGGGGUaGCUCau--GGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 130865 | 0.68 | 0.968367 |
Target: 5'- aGGCgCAgGACUUCAUgacCGuGUGCCUGCg -3' miRNA: 3'- gUUG-GUgCUGGGGUA---GCuCAUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 68449 | 0.68 | 0.968367 |
Target: 5'- uCAACCGCGugCCggucagCAUCGAcuuUCUGCg -3' miRNA: 3'- -GUUGGUGCugGG------GUAGCUcauGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 236702 | 0.68 | 0.968367 |
Target: 5'- ----aACGGCCUCGUCugguugGGGUGCCUGUu -3' miRNA: 3'- guuggUGCUGGGGUAG------CUCAUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 112818 | 0.68 | 0.968367 |
Target: 5'- aCGGCCGCGACCCCc-CGGauuCCgugGCg -3' miRNA: 3'- -GUUGGUGCUGGGGuaGCUcauGGa--CG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 114402 | 0.68 | 0.968367 |
Target: 5'- uCGACCGCcuGGCCgCCAUCGcgcAGggccgagACCUGUg -3' miRNA: 3'- -GUUGGUG--CUGG-GGUAGC---UCa------UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 129720 | 0.68 | 0.968367 |
Target: 5'- cCGGCCGCGG-CCCGUCGAc-GCgaGCg -3' miRNA: 3'- -GUUGGUGCUgGGGUAGCUcaUGgaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 166677 | 0.68 | 0.968367 |
Target: 5'- -cACCugGGCCCCGUggcgcgccaCGucGU-CCUGCa -3' miRNA: 3'- guUGGugCUGGGGUA---------GCu-CAuGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 67290 | 0.68 | 0.968069 |
Target: 5'- aCAGCCGCugcgccuGACgCCCGaCGAGU-UCUGCa -3' miRNA: 3'- -GUUGGUG-------CUG-GGGUaGCUCAuGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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