Results 101 - 120 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14148 | 3' | -53.8 | NC_003521.1 | + | 211274 | 0.68 | 0.965291 |
Target: 5'- gAGCCACGG-CCUAUCGuGGUACggccaaguCUGCa -3' miRNA: 3'- gUUGGUGCUgGGGUAGC-UCAUG--------GACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 150497 | 0.68 | 0.965291 |
Target: 5'- uCAGCUuuuACGGCgCCggCGGGgcCCUGCu -3' miRNA: 3'- -GUUGG---UGCUGgGGuaGCUCauGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 16607 | 0.68 | 0.965291 |
Target: 5'- gGACCGCGACUacgggCGUC-AGUACCgcugGCu -3' miRNA: 3'- gUUGGUGCUGGg----GUAGcUCAUGGa---CG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 159946 | 0.68 | 0.962011 |
Target: 5'- gCAACCACcGCaCCGagGAGUGCCaGCu -3' miRNA: 3'- -GUUGGUGcUGgGGUagCUCAUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 215047 | 0.68 | 0.962011 |
Target: 5'- gCAGCCGCGuggaGCCCC--UGGGcUGCCUGg -3' miRNA: 3'- -GUUGGUGC----UGGGGuaGCUC-AUGGACg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 153177 | 0.68 | 0.962011 |
Target: 5'- gGGCUGCGcCUCCAgccugugCGAG-GCCUGCg -3' miRNA: 3'- gUUGGUGCuGGGGUa------GCUCaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 118132 | 0.68 | 0.962011 |
Target: 5'- aCAACCGacCGGCCCCGcagcugUCG-GUGCUggGCg -3' miRNA: 3'- -GUUGGU--GCUGGGGU------AGCuCAUGGa-CG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 17436 | 0.68 | 0.962011 |
Target: 5'- ---aCACGGCCCgCGUCGGGgcGCC-GCg -3' miRNA: 3'- guugGUGCUGGG-GUAGCUCa-UGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 151030 | 0.68 | 0.962011 |
Target: 5'- -uGCuCACGGCCUgCAUCGAGgu-CUGCg -3' miRNA: 3'- guUG-GUGCUGGG-GUAGCUCaugGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 73951 | 0.68 | 0.962011 |
Target: 5'- gAACCA-GACCagCAcCGuGUGCCUGCu -3' miRNA: 3'- gUUGGUgCUGGg-GUaGCuCAUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 145403 | 0.68 | 0.962011 |
Target: 5'- gGGCCugcucauCGACCCCAccUCGGGcUugCUGg -3' miRNA: 3'- gUUGGu------GCUGGGGU--AGCUC-AugGACg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 44147 | 0.68 | 0.962011 |
Target: 5'- aCAGCCGCGACaUCCuggUGG--ACCUGCg -3' miRNA: 3'- -GUUGGUGCUG-GGGua-GCUcaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 184391 | 0.68 | 0.958521 |
Target: 5'- gGGCCACGaggcgGCCUucgaCcgCGAGUACCgGCg -3' miRNA: 3'- gUUGGUGC-----UGGG----GuaGCUCAUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 170680 | 0.68 | 0.958521 |
Target: 5'- gCAGCCGCGcucGCCgCAgcUCGAGgcCCUGa -3' miRNA: 3'- -GUUGGUGC---UGGgGU--AGCUCauGGACg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 168913 | 0.68 | 0.958521 |
Target: 5'- aGACCgacACGguguACUgCGUgGAGUACCUGCu -3' miRNA: 3'- gUUGG---UGC----UGGgGUAgCUCAUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 83797 | 0.68 | 0.958521 |
Target: 5'- cCGACCGCG-CCCC--CGAa-ACCUGCu -3' miRNA: 3'- -GUUGGUGCuGGGGuaGCUcaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 131269 | 0.68 | 0.958521 |
Target: 5'- cUAGCCgACGACCaCCA-CGAaUACCUGa -3' miRNA: 3'- -GUUGG-UGCUGG-GGUaGCUcAUGGACg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 23945 | 0.68 | 0.958521 |
Target: 5'- -uGCgACGACCUCAUCG-GUcucGCCcGCa -3' miRNA: 3'- guUGgUGCUGGGGUAGCuCA---UGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 2355 | 0.68 | 0.954817 |
Target: 5'- gGGCCGCGucuccGCCCCGcccgcCGAGgccgcCCUGCg -3' miRNA: 3'- gUUGGUGC-----UGGGGUa----GCUCau---GGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 223613 | 0.69 | 0.952491 |
Target: 5'- aGACCuCGGCCuCCGUCuGGUaggcguccacgaugcGCCUGCc -3' miRNA: 3'- gUUGGuGCUGG-GGUAGcUCA---------------UGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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