miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 92039 0.69 0.950896
Target:  5'- gCAGCCGCGGCUCCucggcgCGAccGCCgaggGCa -3'
miRNA:   3'- -GUUGGUGCUGGGGua----GCUcaUGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 92727 0.7 0.922648
Target:  5'- cCAcCCGCGACCuCCGgacCGucUGCCUGCc -3'
miRNA:   3'- -GUuGGUGCUGG-GGUa--GCucAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 95237 0.71 0.899255
Target:  5'- aGGCCACGGCCgCcgCGucGUGCCgccGCa -3'
miRNA:   3'- gUUGGUGCUGGgGuaGCu-CAUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 100112 0.66 0.986356
Target:  5'- aCAGCaggauGCGACCCCG-CGgcuggcGGU-CCUGCg -3'
miRNA:   3'- -GUUGg----UGCUGGGGUaGC------UCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 102905 0.66 0.984687
Target:  5'- gAACCGCGACCCgcCAgccaCGGGUacgguuugaggGCCgagGCg -3'
miRNA:   3'- gUUGGUGCUGGG--GUa---GCUCA-----------UGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 103940 0.66 0.984687
Target:  5'- uCGACCGCGAacaccggcgccaCCCgCcgCGAGU-CCgUGCa -3'
miRNA:   3'- -GUUGGUGCU------------GGG-GuaGCUCAuGG-ACG- -5'
14148 3' -53.8 NC_003521.1 + 104935 0.67 0.976185
Target:  5'- aCGAgCGCGACgCCGUCGGuuacucgaaggucGUGCC-GCg -3'
miRNA:   3'- -GUUgGUGCUGgGGUAGCU-------------CAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 105258 0.67 0.980889
Target:  5'- gCGugCGCGACCCCcaggcgGUUGAGUuCCgucaacaGCg -3'
miRNA:   3'- -GUugGUGCUGGGG------UAGCUCAuGGa------CG- -5'
14148 3' -53.8 NC_003521.1 + 106528 1.11 0.005871
Target:  5'- uCAACCACGACCCCAUCGAGUACCUGCu -3'
miRNA:   3'- -GUUGGUGCUGGGGUAGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 107062 0.7 0.922648
Target:  5'- -cGCCGCGuCCCCGgaaUCGccggGCCUGCc -3'
miRNA:   3'- guUGGUGCuGGGGU---AGCuca-UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 109721 0.66 0.989272
Target:  5'- gCAGCCGCGccGCCCCgccGUCcGGaGCCcGCg -3'
miRNA:   3'- -GUUGGUGC--UGGGG---UAGcUCaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 110660 0.66 0.987882
Target:  5'- aCggUCACGGCCCgGUCG---GCCaGCg -3'
miRNA:   3'- -GuuGGUGCUGGGgUAGCucaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 112662 0.72 0.84994
Target:  5'- ---gCACGACCCCA-CGcccUGCCUGCa -3'
miRNA:   3'- guugGUGCUGGGGUaGCuc-AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 112702 0.7 0.922648
Target:  5'- gGGCCGCccucgGACCCCAUgaUGcAGcGCCUGCu -3'
miRNA:   3'- gUUGGUG-----CUGGGGUA--GC-UCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 112818 0.68 0.968367
Target:  5'- aCGGCCGCGACCCCc-CGGauuCCgugGCg -3'
miRNA:   3'- -GUUGGUGCUGGGGuaGCUcauGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 113045 0.66 0.989272
Target:  5'- gCGGCUACGGCCgCCGcccgacuaCGAGgagACgCUGCg -3'
miRNA:   3'- -GUUGGUGCUGG-GGUa-------GCUCa--UG-GACG- -5'
14148 3' -53.8 NC_003521.1 + 113182 0.71 0.897356
Target:  5'- gGGCCGCGAggugCCCGUCuucgugcacgagcaGcAGUACCUGCg -3'
miRNA:   3'- gUUGGUGCUg---GGGUAG--------------C-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 113631 0.73 0.791422
Target:  5'- uCAGCCGCGucaACCCCGUggcCGAGUACaUGUu -3'
miRNA:   3'- -GUUGGUGC---UGGGGUA---GCUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 114402 0.68 0.968367
Target:  5'- uCGACCGCcuGGCCgCCAUCGcgcAGggccgagACCUGUg -3'
miRNA:   3'- -GUUGGUG--CUGG-GGUAGC---UCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 114912 0.67 0.980889
Target:  5'- gGACCugGACguguCCC-UCGAGcGgCUGCu -3'
miRNA:   3'- gUUGGugCUG----GGGuAGCUCaUgGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.