miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 115180 0.66 0.984687
Target:  5'- --uUCAaGACCaUCGaCGAGUACCUGCu -3'
miRNA:   3'- guuGGUgCUGG-GGUaGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 116183 0.66 0.989272
Target:  5'- -uGCC-CGACCCgGugaUCGAcaacUACCUGCu -3'
miRNA:   3'- guUGGuGCUGGGgU---AGCUc---AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 116806 0.79 0.462497
Target:  5'- aCGGCCGCGACCCCGacUGGGUG-CUGCa -3'
miRNA:   3'- -GUUGGUGCUGGGGUa-GCUCAUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 116843 0.67 0.976427
Target:  5'- aGACCugACGGCCgCCGaccgCGAcgACCUGCg -3'
miRNA:   3'- gUUGG--UGCUGG-GGUa---GCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 118132 0.68 0.962011
Target:  5'- aCAACCGacCGGCCCCGcagcugUCG-GUGCUggGCg -3'
miRNA:   3'- -GUUGGU--GCUGGGGU------AGCuCAUGGa-CG- -5'
14148 3' -53.8 NC_003521.1 + 118667 0.69 0.932975
Target:  5'- aCGuCCugGGCCCCAucUCGGGgcACgUGCu -3'
miRNA:   3'- -GUuGGugCUGGGGU--AGCUCa-UGgACG- -5'
14148 3' -53.8 NC_003521.1 + 118939 0.67 0.978744
Target:  5'- cCAGCCAgGAgCCCAugUCGcuGUACgUGUa -3'
miRNA:   3'- -GUUGGUgCUgGGGU--AGCu-CAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 122113 0.66 0.990535
Target:  5'- -uGCCGCG-CCCC-UCGcccauGaGCCUGCc -3'
miRNA:   3'- guUGGUGCuGGGGuAGCu----CaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 122206 0.7 0.90361
Target:  5'- --cUCGCGACUCCAUgcugccugcgagcgCGGGUGCCgGCg -3'
miRNA:   3'- guuGGUGCUGGGGUA--------------GCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 129599 0.71 0.899255
Target:  5'- cCGGCCGCGACgCUCuaauaGUCGAGUcGCCgGCc -3'
miRNA:   3'- -GUUGGUGCUG-GGG-----UAGCUCA-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 129720 0.68 0.968367
Target:  5'- cCGGCCGCGG-CCCGUCGAc-GCgaGCg -3'
miRNA:   3'- -GUUGGUGCUgGGGUAGCUcaUGgaCG- -5'
14148 3' -53.8 NC_003521.1 + 130865 0.68 0.968367
Target:  5'- aGGCgCAgGACUUCAUgacCGuGUGCCUGCg -3'
miRNA:   3'- gUUG-GUgCUGGGGUA---GCuCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 131197 0.67 0.976427
Target:  5'- gAGCgGCGGCUcaucuucaUCAUCGAGacggGCCUGUg -3'
miRNA:   3'- gUUGgUGCUGG--------GGUAGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 131269 0.68 0.958521
Target:  5'- cUAGCCgACGACCaCCA-CGAaUACCUGa -3'
miRNA:   3'- -GUUGG-UGCUGG-GGUaGCUcAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 131460 0.71 0.892846
Target:  5'- aGGCCGCGcucucgGCCUCGUCGGccuCCUGCg -3'
miRNA:   3'- gUUGGUGC------UGGGGUAGCUcauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 134721 0.66 0.987882
Target:  5'- -cGCCACG-CCCUgccCGAGgcCUUGCg -3'
miRNA:   3'- guUGGUGCuGGGGua-GCUCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 135927 0.77 0.584147
Target:  5'- uCGGCCACGGCCgCGggaugugcgacgccUCGGGcGCCUGCg -3'
miRNA:   3'- -GUUGGUGCUGGgGU--------------AGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 136146 0.7 0.911405
Target:  5'- --cCCACGGCCCCcUCGAGcuCC-GCg -3'
miRNA:   3'- guuGGUGCUGGGGuAGCUCauGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 136752 0.69 0.950896
Target:  5'- -uGCCGCG-CCCgcUCGAGcugcuggccUACCUGCg -3'
miRNA:   3'- guUGGUGCuGGGguAGCUC---------AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 137270 0.67 0.979622
Target:  5'- gCGACCugGGCCCCGUcauccccacgcacgcCuccaugagcGAGUucgcgcGCCUGCu -3'
miRNA:   3'- -GUUGGugCUGGGGUA---------------G---------CUCA------UGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.