miRNA display CGI


Results 101 - 120 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 137666 0.66 0.987882
Target:  5'- --uCCACGACUaCGUgGAGacgcGCCUGCu -3'
miRNA:   3'- guuGGUGCUGGgGUAgCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 138887 0.74 0.745348
Target:  5'- gCGGCCACgugGACCCCAccggCGAGUacGCCgGCu -3'
miRNA:   3'- -GUUGGUG---CUGGGGUa---GCUCA--UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 138908 0.69 0.937795
Target:  5'- -cACCACGGCCgC-UCG-GUgcGCCUGCc -3'
miRNA:   3'- guUGGUGCUGGgGuAGCuCA--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 140616 0.67 0.980473
Target:  5'- cCGGCCuACGACCUgCAgcgguacacggcCGAGaGCCUGCg -3'
miRNA:   3'- -GUUGG-UGCUGGG-GUa-----------GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 142084 0.66 0.990535
Target:  5'- aCGACUACGAcgaccaCCCCcgCGgcaGGUACCcuccgcUGCg -3'
miRNA:   3'- -GUUGGUGCU------GGGGuaGC---UCAUGG------ACG- -5'
14148 3' -53.8 NC_003521.1 + 144123 0.69 0.946754
Target:  5'- -cGCCGCGGCCUgGaCGAGgugcGCCUGg -3'
miRNA:   3'- guUGGUGCUGGGgUaGCUCa---UGGACg -5'
14148 3' -53.8 NC_003521.1 + 145218 0.66 0.987882
Target:  5'- uCGGCCACcaaguucuacgaGGCCUUcgUGAGcggcUGCCUGCa -3'
miRNA:   3'- -GUUGGUG------------CUGGGGuaGCUC----AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 145403 0.68 0.962011
Target:  5'- gGGCCugcucauCGACCCCAccUCGGGcUugCUGg -3'
miRNA:   3'- gUUGGu------GCUGGGGU--AGCUC-AugGACg -5'
14148 3' -53.8 NC_003521.1 + 145666 0.67 0.978744
Target:  5'- -uGCCcuCGGCCCg--CGAGUuCCUGCu -3'
miRNA:   3'- guUGGu-GCUGGGguaGCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 146782 0.66 0.984687
Target:  5'- cCGGCCugGacagaaggcggGCCCCggCGAGcUAUgUGCg -3'
miRNA:   3'- -GUUGGugC-----------UGGGGuaGCUC-AUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 148588 0.66 0.986356
Target:  5'- aGACCgcGCGGCgCCCGUCGGGc-CCUcacaGCg -3'
miRNA:   3'- gUUGG--UGCUG-GGGUAGCUCauGGA----CG- -5'
14148 3' -53.8 NC_003521.1 + 148731 0.7 0.922648
Target:  5'- aGGCCucCGugCCCAUCGugcAGUGCCUc- -3'
miRNA:   3'- gUUGGu-GCugGGGUAGC---UCAUGGAcg -5'
14148 3' -53.8 NC_003521.1 + 150066 0.74 0.726193
Target:  5'- -cAUCGuCGACCUgGUCGAGUGCgUGCu -3'
miRNA:   3'- guUGGU-GCUGGGgUAGCUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 150339 0.67 0.980889
Target:  5'- ---aCACGGCCCCGUcucggcCGAGgucUGCgUGCg -3'
miRNA:   3'- guugGUGCUGGGGUA------GCUC---AUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 150497 0.68 0.965291
Target:  5'- uCAGCUuuuACGGCgCCggCGGGgcCCUGCu -3'
miRNA:   3'- -GUUGG---UGCUGgGGuaGCUCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 151030 0.68 0.962011
Target:  5'- -uGCuCACGGCCUgCAUCGAGgu-CUGCg -3'
miRNA:   3'- guUG-GUGCUGGG-GUAGCUCaugGACG- -5'
14148 3' -53.8 NC_003521.1 + 151087 0.73 0.791422
Target:  5'- gGACCGCcGACCCC-UCGGGUcggGCC-GCu -3'
miRNA:   3'- gUUGGUG-CUGGGGuAGCUCA---UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 152514 0.7 0.905443
Target:  5'- aGACC-CGcauCCUCAUCGAGgcggcCCUGCg -3'
miRNA:   3'- gUUGGuGCu--GGGGUAGCUCau---GGACG- -5'
14148 3' -53.8 NC_003521.1 + 152773 0.66 0.990535
Target:  5'- -cACCGCGACCUCAUccgcgcgcucaaCGAGcucaAgCUGCa -3'
miRNA:   3'- guUGGUGCUGGGGUA------------GCUCa---UgGACG- -5'
14148 3' -53.8 NC_003521.1 + 153177 0.68 0.962011
Target:  5'- gGGCUGCGcCUCCAgccugugCGAG-GCCUGCg -3'
miRNA:   3'- gUUGGUGCuGGGGUa------GCUCaUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.