miRNA display CGI


Results 121 - 140 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 154227 0.67 0.982867
Target:  5'- -cACCACGAgcgcuucuuCCCCGgcugCGGcGUGCCcUGCc -3'
miRNA:   3'- guUGGUGCU---------GGGGUa---GCU-CAUGG-ACG- -5'
14148 3' -53.8 NC_003521.1 + 154381 0.83 0.316282
Target:  5'- aCGAUCACGACCUCAUCGAcGUGCC-GCc -3'
miRNA:   3'- -GUUGGUGCUGGGGUAGCU-CAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 157512 0.66 0.986196
Target:  5'- cCGACCGCuACCCCcuGUCGcacaauGUggacauggccuacGCCUGCg -3'
miRNA:   3'- -GUUGGUGcUGGGG--UAGCu-----CA-------------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 157806 0.66 0.988454
Target:  5'- gGACCGCGAUCUCAUCcucacguauaacaaaGAGUgGCCauuauUGCu -3'
miRNA:   3'- gUUGGUGCUGGGGUAG---------------CUCA-UGG-----ACG- -5'
14148 3' -53.8 NC_003521.1 + 159946 0.68 0.962011
Target:  5'- gCAACCACcGCaCCGagGAGUGCCaGCu -3'
miRNA:   3'- -GUUGGUGcUGgGGUagCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 160266 0.67 0.982867
Target:  5'- gGACUcgACGACCUCAU-GAGcgGCCUGg -3'
miRNA:   3'- gUUGG--UGCUGGGGUAgCUCa-UGGACg -5'
14148 3' -53.8 NC_003521.1 + 161878 0.7 0.922107
Target:  5'- gGAgCAUGGCCagaaagaUCggCGAGUACCUGCu -3'
miRNA:   3'- gUUgGUGCUGG-------GGuaGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 162916 0.67 0.980889
Target:  5'- uGACgGgGACCUCAagGAGaACCUGUu -3'
miRNA:   3'- gUUGgUgCUGGGGUagCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 163114 0.69 0.946754
Target:  5'- -cGCCACGACCaCCGccgccuccUCGGGcAUCUGUc -3'
miRNA:   3'- guUGGUGCUGG-GGU--------AGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 163406 0.72 0.857597
Target:  5'- uCGGCCGUGGCCCCGUCGucGGcUGCCgcUGCc -3'
miRNA:   3'- -GUUGGUGCUGGGGUAGC--UC-AUGG--ACG- -5'
14148 3' -53.8 NC_003521.1 + 163732 0.68 0.971245
Target:  5'- -uGCCGCGACCCCAUgCGccgcaugCUGCu -3'
miRNA:   3'- guUGGUGCUGGGGUA-GCucaug--GACG- -5'
14148 3' -53.8 NC_003521.1 + 164682 0.66 0.989272
Target:  5'- -cGCCGUGugCgCGUCGAGgACCUGg -3'
miRNA:   3'- guUGGUGCugGgGUAGCUCaUGGACg -5'
14148 3' -53.8 NC_003521.1 + 164998 0.68 0.971245
Target:  5'- aGAUCAuCGAUCCCAgCGAGgagGCC-GCg -3'
miRNA:   3'- gUUGGU-GCUGGGGUaGCUCa--UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 166130 0.66 0.986356
Target:  5'- -uGCCGCGgcGCCgCCGUCGcugcUGCUUGCg -3'
miRNA:   3'- guUGGUGC--UGG-GGUAGCuc--AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 166677 0.68 0.968367
Target:  5'- -cACCugGGCCCCGUggcgcgccaCGucGU-CCUGCa -3'
miRNA:   3'- guUGGugCUGGGGUA---------GCu-CAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 167448 0.66 0.989272
Target:  5'- gGACCACcACCCCGUggucagaucCGAGagggaagGCCUGa -3'
miRNA:   3'- gUUGGUGcUGGGGUA---------GCUCa------UGGACg -5'
14148 3' -53.8 NC_003521.1 + 167846 0.66 0.990535
Target:  5'- -cGCCGCGGgCUCGUCGGcUACUUGa -3'
miRNA:   3'- guUGGUGCUgGGGUAGCUcAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 167987 0.69 0.946754
Target:  5'- -cGCCGCGcCCaggCCGUCGcGGUgaGCCUGCu -3'
miRNA:   3'- guUGGUGCuGG---GGUAGC-UCA--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 168913 0.68 0.958521
Target:  5'- aGACCgacACGguguACUgCGUgGAGUACCUGCu -3'
miRNA:   3'- gUUGG---UGC----UGGgGUAgCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 170680 0.68 0.958521
Target:  5'- gCAGCCGCGcucGCCgCAgcUCGAGgcCCUGa -3'
miRNA:   3'- -GUUGGUGC---UGGgGU--AGCUCauGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.