Results 141 - 160 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14148 | 3' | -53.8 | NC_003521.1 | + | 170969 | 0.7 | 0.927926 |
Target: 5'- -cGCgGCGGCCUCAUCGGcagcGUcaucgACCUGCc -3' miRNA: 3'- guUGgUGCUGGGGUAGCU----CA-----UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 171313 | 0.67 | 0.978744 |
Target: 5'- gGugCugGGCCUCAaCGcg-GCCUGCg -3' miRNA: 3'- gUugGugCUGGGGUaGCucaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 175674 | 0.69 | 0.942387 |
Target: 5'- --uCCACGGCCCgugCGAGguccGCUUGCg -3' miRNA: 3'- guuGGUGCUGGGguaGCUCa---UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 179228 | 0.66 | 0.990535 |
Target: 5'- -cGCUGCGcCCCCugcagCGAGU-UCUGCa -3' miRNA: 3'- guUGGUGCuGGGGua---GCUCAuGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 181548 | 0.66 | 0.987882 |
Target: 5'- -cGCCGCGACCgCUcaguaGUCGG--ACCUGUa -3' miRNA: 3'- guUGGUGCUGG-GG-----UAGCUcaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 182003 | 0.66 | 0.990535 |
Target: 5'- --gUCACGGCCgCCA-CGcGcUGCCUGCu -3' miRNA: 3'- guuGGUGCUGG-GGUaGCuC-AUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 183182 | 0.67 | 0.976185 |
Target: 5'- -cGCCGucccgucccguuuCGGCCCCcgUGAcGUGCCUGg -3' miRNA: 3'- guUGGU-------------GCUGGGGuaGCU-CAUGGACg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 183832 | 0.77 | 0.58713 |
Target: 5'- uGACCGCGGCC--AUCGAGgagaGCCUGCa -3' miRNA: 3'- gUUGGUGCUGGggUAGCUCa---UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 183903 | 0.66 | 0.990535 |
Target: 5'- gAGCCACGGCCgUCAcggCGcuGUACCggUGCa -3' miRNA: 3'- gUUGGUGCUGG-GGUa--GCu-CAUGG--ACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 184391 | 0.68 | 0.958521 |
Target: 5'- gGGCCACGaggcgGCCUucgaCcgCGAGUACCgGCg -3' miRNA: 3'- gUUGGUGC-----UGGG----GuaGCUCAUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 185186 | 0.74 | 0.735814 |
Target: 5'- gCAACCGCGGCUUCcUCGuuUACUUGCa -3' miRNA: 3'- -GUUGGUGCUGGGGuAGCucAUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 186710 | 0.69 | 0.932975 |
Target: 5'- aCGACgACGGCUCCGgucUgGAGaacgACCUGCu -3' miRNA: 3'- -GUUGgUGCUGGGGU---AgCUCa---UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 190953 | 0.66 | 0.985372 |
Target: 5'- -cGCCACGACCgCCAUcaugagcaugcuggaCGAG-GCCgagcgGCa -3' miRNA: 3'- guUGGUGCUGG-GGUA---------------GCUCaUGGa----CG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 193317 | 0.66 | 0.987882 |
Target: 5'- uCAGCUACGGCUgCAUCGcGGU-CCggGCc -3' miRNA: 3'- -GUUGGUGCUGGgGUAGC-UCAuGGa-CG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 193916 | 0.66 | 0.989272 |
Target: 5'- uCAuCgACGACCCCuucgaCGAGUGCCc-- -3' miRNA: 3'- -GUuGgUGCUGGGGua---GCUCAUGGacg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 196115 | 0.72 | 0.834064 |
Target: 5'- -cACCAgGAUCUgGcgcgucUCGGGUACCUGCg -3' miRNA: 3'- guUGGUgCUGGGgU------AGCUCAUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 200444 | 0.67 | 0.976427 |
Target: 5'- -cGCCACGACgCCgaCAUCGuggagaAGgcCCUGCg -3' miRNA: 3'- guUGGUGCUG-GG--GUAGC------UCauGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 201266 | 0.7 | 0.91714 |
Target: 5'- gCAGCCAgaUGGCCggCGUCGGGgccaccgACCUGCg -3' miRNA: 3'- -GUUGGU--GCUGGg-GUAGCUCa------UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 201392 | 0.66 | 0.984687 |
Target: 5'- gAGCCACGGCgCCGccuaCGGGacuggacgGCCUGUg -3' miRNA: 3'- gUUGGUGCUGgGGUa---GCUCa-------UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 202583 | 0.69 | 0.937795 |
Target: 5'- gGGCCGCGucucGCCCCGcccgcCGAGgccgcCCUGCg -3' miRNA: 3'- gUUGGUGC----UGGGGUa----GCUCau---GGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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