Results 61 - 80 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14148 | 3' | -53.8 | NC_003521.1 | + | 163114 | 0.69 | 0.946754 |
Target: 5'- -cGCCACGACCaCCGccgccuccUCGGGcAUCUGUc -3' miRNA: 3'- guUGGUGCUGG-GGU--------AGCUCaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 162916 | 0.67 | 0.980889 |
Target: 5'- uGACgGgGACCUCAagGAGaACCUGUu -3' miRNA: 3'- gUUGgUgCUGGGGUagCUCaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 161878 | 0.7 | 0.922107 |
Target: 5'- gGAgCAUGGCCagaaagaUCggCGAGUACCUGCu -3' miRNA: 3'- gUUgGUGCUGG-------GGuaGCUCAUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 160266 | 0.67 | 0.982867 |
Target: 5'- gGACUcgACGACCUCAU-GAGcgGCCUGg -3' miRNA: 3'- gUUGG--UGCUGGGGUAgCUCa-UGGACg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 159946 | 0.68 | 0.962011 |
Target: 5'- gCAACCACcGCaCCGagGAGUGCCaGCu -3' miRNA: 3'- -GUUGGUGcUGgGGUagCUCAUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 157806 | 0.66 | 0.988454 |
Target: 5'- gGACCGCGAUCUCAUCcucacguauaacaaaGAGUgGCCauuauUGCu -3' miRNA: 3'- gUUGGUGCUGGGGUAG---------------CUCA-UGG-----ACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 157512 | 0.66 | 0.986196 |
Target: 5'- cCGACCGCuACCCCcuGUCGcacaauGUggacauggccuacGCCUGCg -3' miRNA: 3'- -GUUGGUGcUGGGG--UAGCu-----CA-------------UGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 154381 | 0.83 | 0.316282 |
Target: 5'- aCGAUCACGACCUCAUCGAcGUGCC-GCc -3' miRNA: 3'- -GUUGGUGCUGGGGUAGCU-CAUGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 154227 | 0.67 | 0.982867 |
Target: 5'- -cACCACGAgcgcuucuuCCCCGgcugCGGcGUGCCcUGCc -3' miRNA: 3'- guUGGUGCU---------GGGGUa---GCU-CAUGG-ACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 153177 | 0.68 | 0.962011 |
Target: 5'- gGGCUGCGcCUCCAgccugugCGAG-GCCUGCg -3' miRNA: 3'- gUUGGUGCuGGGGUa------GCUCaUGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 152773 | 0.66 | 0.990535 |
Target: 5'- -cACCGCGACCUCAUccgcgcgcucaaCGAGcucaAgCUGCa -3' miRNA: 3'- guUGGUGCUGGGGUA------------GCUCa---UgGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 152514 | 0.7 | 0.905443 |
Target: 5'- aGACC-CGcauCCUCAUCGAGgcggcCCUGCg -3' miRNA: 3'- gUUGGuGCu--GGGGUAGCUCau---GGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 151087 | 0.73 | 0.791422 |
Target: 5'- gGACCGCcGACCCC-UCGGGUcggGCC-GCu -3' miRNA: 3'- gUUGGUG-CUGGGGuAGCUCA---UGGaCG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 151030 | 0.68 | 0.962011 |
Target: 5'- -uGCuCACGGCCUgCAUCGAGgu-CUGCg -3' miRNA: 3'- guUG-GUGCUGGG-GUAGCUCaugGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 150497 | 0.68 | 0.965291 |
Target: 5'- uCAGCUuuuACGGCgCCggCGGGgcCCUGCu -3' miRNA: 3'- -GUUGG---UGCUGgGGuaGCUCauGGACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 150339 | 0.67 | 0.980889 |
Target: 5'- ---aCACGGCCCCGUcucggcCGAGgucUGCgUGCg -3' miRNA: 3'- guugGUGCUGGGGUA------GCUC---AUGgACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 150066 | 0.74 | 0.726193 |
Target: 5'- -cAUCGuCGACCUgGUCGAGUGCgUGCu -3' miRNA: 3'- guUGGU-GCUGGGgUAGCUCAUGgACG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 148731 | 0.7 | 0.922648 |
Target: 5'- aGGCCucCGugCCCAUCGugcAGUGCCUc- -3' miRNA: 3'- gUUGGu-GCugGGGUAGC---UCAUGGAcg -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 148588 | 0.66 | 0.986356 |
Target: 5'- aGACCgcGCGGCgCCCGUCGGGc-CCUcacaGCg -3' miRNA: 3'- gUUGG--UGCUG-GGGUAGCUCauGGA----CG- -5' |
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14148 | 3' | -53.8 | NC_003521.1 | + | 146782 | 0.66 | 0.984687 |
Target: 5'- cCGGCCugGacagaaggcggGCCCCggCGAGcUAUgUGCg -3' miRNA: 3'- -GUUGGugC-----------UGGGGuaGCUC-AUGgACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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