miRNA display CGI


Results 81 - 100 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 145666 0.67 0.978744
Target:  5'- -uGCCcuCGGCCCg--CGAGUuCCUGCu -3'
miRNA:   3'- guUGGu-GCUGGGguaGCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 145403 0.68 0.962011
Target:  5'- gGGCCugcucauCGACCCCAccUCGGGcUugCUGg -3'
miRNA:   3'- gUUGGu------GCUGGGGU--AGCUC-AugGACg -5'
14148 3' -53.8 NC_003521.1 + 145218 0.66 0.987882
Target:  5'- uCGGCCACcaaguucuacgaGGCCUUcgUGAGcggcUGCCUGCa -3'
miRNA:   3'- -GUUGGUG------------CUGGGGuaGCUC----AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 144123 0.69 0.946754
Target:  5'- -cGCCGCGGCCUgGaCGAGgugcGCCUGg -3'
miRNA:   3'- guUGGUGCUGGGgUaGCUCa---UGGACg -5'
14148 3' -53.8 NC_003521.1 + 142084 0.66 0.990535
Target:  5'- aCGACUACGAcgaccaCCCCcgCGgcaGGUACCcuccgcUGCg -3'
miRNA:   3'- -GUUGGUGCU------GGGGuaGC---UCAUGG------ACG- -5'
14148 3' -53.8 NC_003521.1 + 140616 0.67 0.980473
Target:  5'- cCGGCCuACGACCUgCAgcgguacacggcCGAGaGCCUGCg -3'
miRNA:   3'- -GUUGG-UGCUGGG-GUa-----------GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 138908 0.69 0.937795
Target:  5'- -cACCACGGCCgC-UCG-GUgcGCCUGCc -3'
miRNA:   3'- guUGGUGCUGGgGuAGCuCA--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 138887 0.74 0.745348
Target:  5'- gCGGCCACgugGACCCCAccggCGAGUacGCCgGCu -3'
miRNA:   3'- -GUUGGUG---CUGGGGUa---GCUCA--UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 137666 0.66 0.987882
Target:  5'- --uCCACGACUaCGUgGAGacgcGCCUGCu -3'
miRNA:   3'- guuGGUGCUGGgGUAgCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 137270 0.67 0.979622
Target:  5'- gCGACCugGGCCCCGUcauccccacgcacgcCuccaugagcGAGUucgcgcGCCUGCu -3'
miRNA:   3'- -GUUGGugCUGGGGUA---------------G---------CUCA------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 136752 0.69 0.950896
Target:  5'- -uGCCGCG-CCCgcUCGAGcugcuggccUACCUGCg -3'
miRNA:   3'- guUGGUGCuGGGguAGCUC---------AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 136146 0.7 0.911405
Target:  5'- --cCCACGGCCCCcUCGAGcuCC-GCg -3'
miRNA:   3'- guuGGUGCUGGGGuAGCUCauGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 135927 0.77 0.584147
Target:  5'- uCGGCCACGGCCgCGggaugugcgacgccUCGGGcGCCUGCg -3'
miRNA:   3'- -GUUGGUGCUGGgGU--------------AGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 134721 0.66 0.987882
Target:  5'- -cGCCACG-CCCUgccCGAGgcCUUGCg -3'
miRNA:   3'- guUGGUGCuGGGGua-GCUCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 131460 0.71 0.892846
Target:  5'- aGGCCGCGcucucgGCCUCGUCGGccuCCUGCg -3'
miRNA:   3'- gUUGGUGC------UGGGGUAGCUcauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 131269 0.68 0.958521
Target:  5'- cUAGCCgACGACCaCCA-CGAaUACCUGa -3'
miRNA:   3'- -GUUGG-UGCUGG-GGUaGCUcAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 131197 0.67 0.976427
Target:  5'- gAGCgGCGGCUcaucuucaUCAUCGAGacggGCCUGUg -3'
miRNA:   3'- gUUGgUGCUGG--------GGUAGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 130865 0.68 0.968367
Target:  5'- aGGCgCAgGACUUCAUgacCGuGUGCCUGCg -3'
miRNA:   3'- gUUG-GUgCUGGGGUA---GCuCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 129720 0.68 0.968367
Target:  5'- cCGGCCGCGG-CCCGUCGAc-GCgaGCg -3'
miRNA:   3'- -GUUGGUGCUgGGGUAGCUcaUGgaCG- -5'
14148 3' -53.8 NC_003521.1 + 129599 0.71 0.899255
Target:  5'- cCGGCCGCGACgCUCuaauaGUCGAGUcGCCgGCc -3'
miRNA:   3'- -GUUGGUGCUG-GGG-----UAGCUCA-UGGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.