miRNA display CGI


Results 101 - 120 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 122206 0.7 0.90361
Target:  5'- --cUCGCGACUCCAUgcugccugcgagcgCGGGUGCCgGCg -3'
miRNA:   3'- guuGGUGCUGGGGUA--------------GCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 122113 0.66 0.990535
Target:  5'- -uGCCGCG-CCCC-UCGcccauGaGCCUGCc -3'
miRNA:   3'- guUGGUGCuGGGGuAGCu----CaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 118939 0.67 0.978744
Target:  5'- cCAGCCAgGAgCCCAugUCGcuGUACgUGUa -3'
miRNA:   3'- -GUUGGUgCUgGGGU--AGCu-CAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 118667 0.69 0.932975
Target:  5'- aCGuCCugGGCCCCAucUCGGGgcACgUGCu -3'
miRNA:   3'- -GUuGGugCUGGGGU--AGCUCa-UGgACG- -5'
14148 3' -53.8 NC_003521.1 + 118132 0.68 0.962011
Target:  5'- aCAACCGacCGGCCCCGcagcugUCG-GUGCUggGCg -3'
miRNA:   3'- -GUUGGU--GCUGGGGU------AGCuCAUGGa-CG- -5'
14148 3' -53.8 NC_003521.1 + 116843 0.67 0.976427
Target:  5'- aGACCugACGGCCgCCGaccgCGAcgACCUGCg -3'
miRNA:   3'- gUUGG--UGCUGG-GGUa---GCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 116806 0.79 0.462497
Target:  5'- aCGGCCGCGACCCCGacUGGGUG-CUGCa -3'
miRNA:   3'- -GUUGGUGCUGGGGUa-GCUCAUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 116183 0.66 0.989272
Target:  5'- -uGCC-CGACCCgGugaUCGAcaacUACCUGCu -3'
miRNA:   3'- guUGGuGCUGGGgU---AGCUc---AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 115180 0.66 0.984687
Target:  5'- --uUCAaGACCaUCGaCGAGUACCUGCu -3'
miRNA:   3'- guuGGUgCUGG-GGUaGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 114912 0.67 0.980889
Target:  5'- gGACCugGACguguCCC-UCGAGcGgCUGCu -3'
miRNA:   3'- gUUGGugCUG----GGGuAGCUCaUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 114402 0.68 0.968367
Target:  5'- uCGACCGCcuGGCCgCCAUCGcgcAGggccgagACCUGUg -3'
miRNA:   3'- -GUUGGUG--CUGG-GGUAGC---UCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 113631 0.73 0.791422
Target:  5'- uCAGCCGCGucaACCCCGUggcCGAGUACaUGUu -3'
miRNA:   3'- -GUUGGUGC---UGGGGUA---GCUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 113182 0.71 0.897356
Target:  5'- gGGCCGCGAggugCCCGUCuucgugcacgagcaGcAGUACCUGCg -3'
miRNA:   3'- gUUGGUGCUg---GGGUAG--------------C-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 113045 0.66 0.989272
Target:  5'- gCGGCUACGGCCgCCGcccgacuaCGAGgagACgCUGCg -3'
miRNA:   3'- -GUUGGUGCUGG-GGUa-------GCUCa--UG-GACG- -5'
14148 3' -53.8 NC_003521.1 + 112818 0.68 0.968367
Target:  5'- aCGGCCGCGACCCCc-CGGauuCCgugGCg -3'
miRNA:   3'- -GUUGGUGCUGGGGuaGCUcauGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 112702 0.7 0.922648
Target:  5'- gGGCCGCccucgGACCCCAUgaUGcAGcGCCUGCu -3'
miRNA:   3'- gUUGGUG-----CUGGGGUA--GC-UCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 112662 0.72 0.84994
Target:  5'- ---gCACGACCCCA-CGcccUGCCUGCa -3'
miRNA:   3'- guugGUGCUGGGGUaGCuc-AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 110660 0.66 0.987882
Target:  5'- aCggUCACGGCCCgGUCG---GCCaGCg -3'
miRNA:   3'- -GuuGGUGCUGGGgUAGCucaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 109721 0.66 0.989272
Target:  5'- gCAGCCGCGccGCCCCgccGUCcGGaGCCcGCg -3'
miRNA:   3'- -GUUGGUGC--UGGGG---UAGcUCaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 107062 0.7 0.922648
Target:  5'- -cGCCGCGuCCCCGgaaUCGccggGCCUGCc -3'
miRNA:   3'- guUGGUGCuGGGGU---AGCuca-UGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.