miRNA display CGI


Results 121 - 140 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 106528 1.11 0.005871
Target:  5'- uCAACCACGACCCCAUCGAGUACCUGCu -3'
miRNA:   3'- -GUUGGUGCUGGGGUAGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 105258 0.67 0.980889
Target:  5'- gCGugCGCGACCCCcaggcgGUUGAGUuCCgucaacaGCg -3'
miRNA:   3'- -GUugGUGCUGGGG------UAGCUCAuGGa------CG- -5'
14148 3' -53.8 NC_003521.1 + 104935 0.67 0.976185
Target:  5'- aCGAgCGCGACgCCGUCGGuuacucgaaggucGUGCC-GCg -3'
miRNA:   3'- -GUUgGUGCUGgGGUAGCU-------------CAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 103940 0.66 0.984687
Target:  5'- uCGACCGCGAacaccggcgccaCCCgCcgCGAGU-CCgUGCa -3'
miRNA:   3'- -GUUGGUGCU------------GGG-GuaGCUCAuGG-ACG- -5'
14148 3' -53.8 NC_003521.1 + 102905 0.66 0.984687
Target:  5'- gAACCGCGACCCgcCAgccaCGGGUacgguuugaggGCCgagGCg -3'
miRNA:   3'- gUUGGUGCUGGG--GUa---GCUCA-----------UGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 100112 0.66 0.986356
Target:  5'- aCAGCaggauGCGACCCCG-CGgcuggcGGU-CCUGCg -3'
miRNA:   3'- -GUUGg----UGCUGGGGUaGC------UCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 95237 0.71 0.899255
Target:  5'- aGGCCACGGCCgCcgCGucGUGCCgccGCa -3'
miRNA:   3'- gUUGGUGCUGGgGuaGCu-CAUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 92727 0.7 0.922648
Target:  5'- cCAcCCGCGACCuCCGgacCGucUGCCUGCc -3'
miRNA:   3'- -GUuGGUGCUGG-GGUa--GCucAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 92039 0.69 0.950896
Target:  5'- gCAGCCGCGGCUCCucggcgCGAccGCCgaggGCa -3'
miRNA:   3'- -GUUGGUGCUGGGGua----GCUcaUGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 88887 0.66 0.990535
Target:  5'- -uGCCuguuCGACCUgcUCucGUACCUGCg -3'
miRNA:   3'- guUGGu---GCUGGGguAGcuCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 88315 0.74 0.726193
Target:  5'- --cCCugGACCCCAUCcccGAGgccUAUCUGCa -3'
miRNA:   3'- guuGGugCUGGGGUAG---CUC---AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 85655 0.67 0.973929
Target:  5'- gCAGCCGCGGCCgCCAgcuguucCGA--GCCgGCg -3'
miRNA:   3'- -GUUGGUGCUGG-GGUa------GCUcaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 85493 0.66 0.990535
Target:  5'- --cCCGCGcCCCCGcCGGG-ACCcGCg -3'
miRNA:   3'- guuGGUGCuGGGGUaGCUCaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 83873 0.66 0.987882
Target:  5'- --uCCuCGACCCagucuUCGGGUGCauCUGCg -3'
miRNA:   3'- guuGGuGCUGGGgu---AGCUCAUG--GACG- -5'
14148 3' -53.8 NC_003521.1 + 83797 0.68 0.958521
Target:  5'- cCGACCGCG-CCCC--CGAa-ACCUGCu -3'
miRNA:   3'- -GUUGGUGCuGGGGuaGCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 80510 0.66 0.986356
Target:  5'- aCAACgAUGACCCCGggGAGgcgGCa-GCg -3'
miRNA:   3'- -GUUGgUGCUGGGGUagCUCa--UGgaCG- -5'
14148 3' -53.8 NC_003521.1 + 80260 0.67 0.976427
Target:  5'- aAACCACGACCaCCA-CuAGUAUC-GCg -3'
miRNA:   3'- gUUGGUGCUGG-GGUaGcUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 79695 0.69 0.942387
Target:  5'- --cCCGCGGCCgCGUUGAu--CCUGCa -3'
miRNA:   3'- guuGGUGCUGGgGUAGCUcauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 77430 0.67 0.973929
Target:  5'- gGGCCACGGCCgagaggaugccgCCGUUG-GUGCCcGUg -3'
miRNA:   3'- gUUGGUGCUGG------------GGUAGCuCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 73951 0.68 0.962011
Target:  5'- gAACCA-GACCagCAcCGuGUGCCUGCu -3'
miRNA:   3'- gUUGGUgCUGGg-GUaGCuCAUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.