miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 167987 0.69 0.946754
Target:  5'- -cGCCGCGcCCaggCCGUCGcGGUgaGCCUGCu -3'
miRNA:   3'- guUGGUGCuGG---GGUAGC-UCA--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 184391 0.68 0.958521
Target:  5'- gGGCCACGaggcgGCCUucgaCcgCGAGUACCgGCg -3'
miRNA:   3'- gUUGGUGC-----UGGG----GuaGCUCAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 88315 0.74 0.726193
Target:  5'- --cCCugGACCCCAUCcccGAGgccUAUCUGCa -3'
miRNA:   3'- guuGGugCUGGGGUAG---CUC---AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 196115 0.72 0.834064
Target:  5'- -cACCAgGAUCUgGcgcgucUCGGGUACCUGCg -3'
miRNA:   3'- guUGGUgCUGGGgU------AGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 49573 0.72 0.857597
Target:  5'- -uGCCGCuuCCCCGaCGAGUGCCgaggaagGCg -3'
miRNA:   3'- guUGGUGcuGGGGUaGCUCAUGGa------CG- -5'
14148 3' -53.8 NC_003521.1 + 15145 0.71 0.899255
Target:  5'- -cGCCugGACCCCAaCGccuuGGUG-CUGCa -3'
miRNA:   3'- guUGGugCUGGGGUaGC----UCAUgGACG- -5'
14148 3' -53.8 NC_003521.1 + 136146 0.7 0.911405
Target:  5'- --cCCACGGCCCCcUCGAGcuCC-GCg -3'
miRNA:   3'- guuGGUGCUGGGGuAGCUCauGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 107062 0.7 0.922648
Target:  5'- -cGCCGCGuCCCCGgaaUCGccggGCCUGCc -3'
miRNA:   3'- guUGGUGCuGGGGU---AGCuca-UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 208888 0.69 0.932975
Target:  5'- --uCCugGACCCCGaggagcgCGAGgucaucgcgcgcUGCCUGCc -3'
miRNA:   3'- guuGGugCUGGGGUa------GCUC------------AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 138908 0.69 0.937795
Target:  5'- -cACCACGGCCgC-UCG-GUgcGCCUGCc -3'
miRNA:   3'- guUGGUGCUGGgGuAGCuCA--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 59607 0.66 0.986356
Target:  5'- aCGACgGCGAUCggCCAUCGcAGUuCCUGg -3'
miRNA:   3'- -GUUGgUGCUGG--GGUAGC-UCAuGGACg -5'
14148 3' -53.8 NC_003521.1 + 190953 0.66 0.985372
Target:  5'- -cGCCACGACCgCCAUcaugagcaugcuggaCGAG-GCCgagcgGCa -3'
miRNA:   3'- guUGGUGCUGG-GGUA---------------GCUCaUGGa----CG- -5'
14148 3' -53.8 NC_003521.1 + 17436 0.68 0.962011
Target:  5'- ---aCACGGCCCgCGUCGGGgcGCC-GCg -3'
miRNA:   3'- guugGUGCUGGG-GUAGCUCa-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 16607 0.68 0.965291
Target:  5'- gGACCGCGACUacgggCGUC-AGUACCgcugGCu -3'
miRNA:   3'- gUUGGUGCUGGg----GUAGcUCAUGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 131197 0.67 0.976427
Target:  5'- gAGCgGCGGCUcaucuucaUCAUCGAGacggGCCUGUg -3'
miRNA:   3'- gUUGgUGCUGG--------GGUAGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 171313 0.67 0.978744
Target:  5'- gGugCugGGCCUCAaCGcg-GCCUGCg -3'
miRNA:   3'- gUugGugCUGGGGUaGCucaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 140616 0.67 0.980473
Target:  5'- cCGGCCuACGACCUgCAgcgguacacggcCGAGaGCCUGCg -3'
miRNA:   3'- -GUUGG-UGCUGGG-GUa-----------GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 105258 0.67 0.980889
Target:  5'- gCGugCGCGACCCCcaggcgGUUGAGUuCCgucaacaGCg -3'
miRNA:   3'- -GUugGUGCUGGGG------UAGCUCAuGGa------CG- -5'
14148 3' -53.8 NC_003521.1 + 154227 0.67 0.982867
Target:  5'- -cACCACGAgcgcuucuuCCCCGgcugCGGcGUGCCcUGCc -3'
miRNA:   3'- guUGGUGCU---------GGGGUa---GCU-CAUGG-ACG- -5'
14148 3' -53.8 NC_003521.1 + 102905 0.66 0.984687
Target:  5'- gAACCGCGACCCgcCAgccaCGGGUacgguuugaggGCCgagGCg -3'
miRNA:   3'- gUUGGUGCUGGG--GUa---GCUCA-----------UGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.