miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 68810 0.67 0.980889
Target:  5'- uGAgCAUGGCCaucgaggcggCCAUCGAGgACCUGa -3'
miRNA:   3'- gUUgGUGCUGG----------GGUAGCUCaUGGACg -5'
14148 3' -53.8 NC_003521.1 + 212716 0.67 0.980889
Target:  5'- gGGCCuCGAUCUUGggCGAGcGCCUGCu -3'
miRNA:   3'- gUUGGuGCUGGGGUa-GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 21422 0.67 0.982867
Target:  5'- gCAGCUAcuCGGCCUCGUCGugcccGUcGCCUGUc -3'
miRNA:   3'- -GUUGGU--GCUGGGGUAGCu----CA-UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 154227 0.67 0.982867
Target:  5'- -cACCACGAgcgcuucuuCCCCGgcugCGGcGUGCCcUGCc -3'
miRNA:   3'- guUGGUGCU---------GGGGUa---GCU-CAUGG-ACG- -5'
14148 3' -53.8 NC_003521.1 + 160266 0.67 0.982867
Target:  5'- gGACUcgACGACCUCAU-GAGcgGCCUGg -3'
miRNA:   3'- gUUGG--UGCUGGGGUAgCUCa-UGGACg -5'
14148 3' -53.8 NC_003521.1 + 207286 0.66 0.984687
Target:  5'- cCGGCCGCcuuuacuucaucGGCCUCAUCagugucuauGAGUGCgUGCc -3'
miRNA:   3'- -GUUGGUG------------CUGGGGUAG---------CUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 190953 0.66 0.985372
Target:  5'- -cGCCACGACCgCCAUcaugagcaugcuggaCGAG-GCCgagcgGCa -3'
miRNA:   3'- guUGGUGCUGG-GGUA---------------GCUCaUGGa----CG- -5'
14148 3' -53.8 NC_003521.1 + 153177 0.68 0.962011
Target:  5'- gGGCUGCGcCUCCAgccugugCGAG-GCCUGCg -3'
miRNA:   3'- gUUGGUGCuGGGGUa------GCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 215047 0.68 0.962011
Target:  5'- gCAGCCGCGuggaGCCCC--UGGGcUGCCUGg -3'
miRNA:   3'- -GUUGGUGC----UGGGGuaGCUC-AUGGACg -5'
14148 3' -53.8 NC_003521.1 + 170680 0.68 0.958521
Target:  5'- gCAGCCGCGcucGCCgCAgcUCGAGgcCCUGa -3'
miRNA:   3'- -GUUGGUGC---UGGgGU--AGCUCauGGACg -5'
14148 3' -53.8 NC_003521.1 + 204987 0.66 0.987882
Target:  5'- gCGACCuCGAUCCCGaugCGGGagACCcGCu -3'
miRNA:   3'- -GUUGGuGCUGGGGUa--GCUCa-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 157806 0.66 0.988454
Target:  5'- gGACCGCGAUCUCAUCcucacguauaacaaaGAGUgGCCauuauUGCu -3'
miRNA:   3'- gUUGGUGCUGGGGUAG---------------CUCA-UGG-----ACG- -5'
14148 3' -53.8 NC_003521.1 + 209269 0.66 0.989272
Target:  5'- gCGACCugGGCUUCGcCGAGUGgUcGCa -3'
miRNA:   3'- -GUUGGugCUGGGGUaGCUCAUgGaCG- -5'
14148 3' -53.8 NC_003521.1 + 164682 0.66 0.989272
Target:  5'- -cGCCGUGugCgCGUCGAGgACCUGg -3'
miRNA:   3'- guUGGUGCugGgGUAGCUCaUGGACg -5'
14148 3' -53.8 NC_003521.1 + 179228 0.66 0.990535
Target:  5'- -cGCUGCGcCCCCugcagCGAGU-UCUGCa -3'
miRNA:   3'- guUGGUGCuGGGGua---GCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 1038 0.7 0.91714
Target:  5'- gCAGCCAgaUGGCCggCGUCGGGgccaccgACCUGCg -3'
miRNA:   3'- -GUUGGU--GCUGGg-GUAGCUCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 112702 0.7 0.922648
Target:  5'- gGGCCGCccucgGACCCCAUgaUGcAGcGCCUGCu -3'
miRNA:   3'- gUUGGUG-----CUGGGGUA--GC-UCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 118667 0.69 0.932975
Target:  5'- aCGuCCugGGCCCCAucUCGGGgcACgUGCu -3'
miRNA:   3'- -GUuGGugCUGGGGU--AGCUCa-UGgACG- -5'
14148 3' -53.8 NC_003521.1 + 20509 0.69 0.942387
Target:  5'- cCGugCugGuCCCCAUCGuGUGCaUGUu -3'
miRNA:   3'- -GUugGugCuGGGGUAGCuCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 92039 0.69 0.950896
Target:  5'- gCAGCCGCGGCUCCucggcgCGAccGCCgaggGCa -3'
miRNA:   3'- -GUUGGUGCUGGGGua----GCUcaUGGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.