miRNA display CGI


Results 101 - 120 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 21422 0.67 0.982867
Target:  5'- gCAGCUAcuCGGCCUCGUCGugcccGUcGCCUGUc -3'
miRNA:   3'- -GUUGGU--GCUGGGGUAGCu----CA-UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 190953 0.66 0.985372
Target:  5'- -cGCCACGACCgCCAUcaugagcaugcuggaCGAG-GCCgagcgGCa -3'
miRNA:   3'- guUGGUGCUGG-GGUA---------------GCUCaUGGa----CG- -5'
14148 3' -53.8 NC_003521.1 + 80510 0.66 0.986356
Target:  5'- aCAACgAUGACCCCGggGAGgcgGCa-GCg -3'
miRNA:   3'- -GUUGgUGCUGGGGUagCUCa--UGgaCG- -5'
14148 3' -53.8 NC_003521.1 + 105258 0.67 0.980889
Target:  5'- gCGugCGCGACCCCcaggcgGUUGAGUuCCgucaacaGCg -3'
miRNA:   3'- -GUugGUGCUGGGG------UAGCUCAuGGa------CG- -5'
14148 3' -53.8 NC_003521.1 + 145666 0.67 0.978744
Target:  5'- -uGCCcuCGGCCCg--CGAGUuCCUGCu -3'
miRNA:   3'- guUGGu-GCUGGGguaGCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 116843 0.67 0.976427
Target:  5'- aGACCugACGGCCgCCGaccgCGAcgACCUGCg -3'
miRNA:   3'- gUUGG--UGCUGG-GGUa---GCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 162916 0.67 0.980889
Target:  5'- uGACgGgGACCUCAagGAGaACCUGUu -3'
miRNA:   3'- gUUGgUgCUGGGGUagCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 113631 0.73 0.791422
Target:  5'- uCAGCCGCGucaACCCCGUggcCGAGUACaUGUu -3'
miRNA:   3'- -GUUGGUGC---UGGGGUA---GCUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 60617 0.67 0.973929
Target:  5'- -cACCACcaACgCCGagcgCGAGUACCUGUa -3'
miRNA:   3'- guUGGUGc-UGgGGUa---GCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 66615 0.67 0.976427
Target:  5'- cCGACCcgcGCGACCCCAacgugggCGcGUcgcACCUGUc -3'
miRNA:   3'- -GUUGG---UGCUGGGGUa------GCuCA---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 12125 0.67 0.978744
Target:  5'- -cGCCGCG-CUCCuUCGGGUGCg-GCg -3'
miRNA:   3'- guUGGUGCuGGGGuAGCUCAUGgaCG- -5'
14148 3' -53.8 NC_003521.1 + 104935 0.67 0.976185
Target:  5'- aCGAgCGCGACgCCGUCGGuuacucgaaggucGUGCC-GCg -3'
miRNA:   3'- -GUUgGUGCUGgGGUAGCU-------------CAUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 85655 0.67 0.973929
Target:  5'- gCAGCCGCGGCCgCCAgcuguucCGA--GCCgGCg -3'
miRNA:   3'- -GUUGGUGCUGG-GGUa------GCUcaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 113182 0.71 0.897356
Target:  5'- gGGCCGCGAggugCCCGUCuucgugcacgagcaGcAGUACCUGCg -3'
miRNA:   3'- gUUGGUGCUg---GGGUAG--------------C-UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 136752 0.69 0.950896
Target:  5'- -uGCCGCG-CCCgcUCGAGcugcuggccUACCUGCg -3'
miRNA:   3'- guUGGUGCuGGGguAGCUC---------AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 42972 0.69 0.950896
Target:  5'- gCGACCcgcCGGCgCCCAcCGAcgACCUGCa -3'
miRNA:   3'- -GUUGGu--GCUG-GGGUaGCUcaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 3673 0.69 0.950896
Target:  5'- gCGGCCGgGACCCuCGUCGGaUGCUgacGCg -3'
miRNA:   3'- -GUUGGUgCUGGG-GUAGCUcAUGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 163114 0.69 0.946754
Target:  5'- -cGCCACGACCaCCGccgccuccUCGGGcAUCUGUc -3'
miRNA:   3'- guUGGUGCUGG-GGU--------AGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 43494 0.67 0.978744
Target:  5'- uGGCCGCGGCggccaacaUCCGUC-AGcGCCUGCc -3'
miRNA:   3'- gUUGGUGCUG--------GGGUAGcUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 216891 0.67 0.978744
Target:  5'- aGGCCAUccaGGCCaCCAgcuugucgugCGAGU-CCUGCg -3'
miRNA:   3'- gUUGGUG---CUGG-GGUa---------GCUCAuGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.