miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 5' -58.5 NC_003521.1 + 191704 0.68 0.781807
Target:  5'- -cGCAGcAGCg-GCGCCGcGGUCACCa- -3'
miRNA:   3'- gaCGUC-UUGgaCGUGGC-CCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 137316 0.68 0.781807
Target:  5'- -cGCGc-GCCUGCuGCUGGGcUCGCCCUu -3'
miRNA:   3'- gaCGUcuUGGACG-UGGCCC-AGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 123199 0.68 0.772869
Target:  5'- -gGCGGAACga-CACCGGGUCGCUg- -3'
miRNA:   3'- gaCGUCUUGgacGUGGCCCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 187183 0.69 0.763816
Target:  5'- gUGCGGAgacggcccGCCUGCAUCGGGgaCAUUCg -3'
miRNA:   3'- gACGUCU--------UGGACGUGGCCCa-GUGGGa -5'
14148 5' -58.5 NC_003521.1 + 65352 0.69 0.763816
Target:  5'- aUGCAGGACgUGCuguCCGGGgagacggCGCgCCg -3'
miRNA:   3'- gACGUCUUGgACGu--GGCCCa------GUG-GGa -5'
14148 5' -58.5 NC_003521.1 + 229644 0.69 0.754654
Target:  5'- -aGaCAGGugCUGCcucACCGGGaUCAUCCUc -3'
miRNA:   3'- gaC-GUCUugGACG---UGGCCC-AGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 31039 0.69 0.754654
Target:  5'- cCUGCAGcACCUGUaACCGGaGcUCGCuCCa -3'
miRNA:   3'- -GACGUCuUGGACG-UGGCC-C-AGUG-GGa -5'
14148 5' -58.5 NC_003521.1 + 109735 0.69 0.745394
Target:  5'- -gGUGGGACUUGUGCaGGGUCACCg- -3'
miRNA:   3'- gaCGUCUUGGACGUGgCCCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 66087 0.69 0.736041
Target:  5'- -aGC-GAGcCCUGCGuuGGGcCGCCCUc -3'
miRNA:   3'- gaCGuCUU-GGACGUggCCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 186747 0.69 0.736041
Target:  5'- aUGUAGAACCgguUGCGCCGGa--ACCCc -3'
miRNA:   3'- gACGUCUUGG---ACGUGGCCcagUGGGa -5'
14148 5' -58.5 NC_003521.1 + 22295 0.69 0.717094
Target:  5'- -gGCAGcucuCCUGCACCuucacGGUCugCCUg -3'
miRNA:   3'- gaCGUCuu--GGACGUGGc----CCAGugGGA- -5'
14148 5' -58.5 NC_003521.1 + 186317 0.7 0.707516
Target:  5'- gUGCAGAuCCUGguccaCGCCGGGcCGCCg- -3'
miRNA:   3'- gACGUCUuGGAC-----GUGGCCCaGUGGga -5'
14148 5' -58.5 NC_003521.1 + 176446 0.7 0.706554
Target:  5'- uCUGCAGAcgcGCCcGCACCucgggcauguccaGGG-CGCCCa -3'
miRNA:   3'- -GACGUCU---UGGaCGUGG-------------CCCaGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 72030 0.7 0.697879
Target:  5'- -cGCGuGGCCUGCACCaGGUCcuggugcagACCCUu -3'
miRNA:   3'- gaCGUcUUGGACGUGGcCCAG---------UGGGA- -5'
14148 5' -58.5 NC_003521.1 + 206237 0.7 0.67846
Target:  5'- uCUGCGcGcGCCUGCAgcCCGGcGUCAgCCUg -3'
miRNA:   3'- -GACGU-CuUGGACGU--GGCC-CAGUgGGA- -5'
14148 5' -58.5 NC_003521.1 + 116024 0.7 0.668694
Target:  5'- -aGCuGGugCUGCcCUGGGUCAUCCc -3'
miRNA:   3'- gaCGuCUugGACGuGGCCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 205138 0.71 0.649087
Target:  5'- aUGguGAACCaGgGCCGGGUgGCCg- -3'
miRNA:   3'- gACguCUUGGaCgUGGCCCAgUGGga -5'
14148 5' -58.5 NC_003521.1 + 219234 0.71 0.639262
Target:  5'- uUGCAGGACCcaggucagcaGCGCCGGGUagagcaggGCCCg -3'
miRNA:   3'- gACGUCUUGGa---------CGUGGCCCAg-------UGGGa -5'
14148 5' -58.5 NC_003521.1 + 126963 0.71 0.639262
Target:  5'- -cGCGGAACCcGCGCCGucGUCGCCg- -3'
miRNA:   3'- gaCGUCUUGGaCGUGGCc-CAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 65426 0.72 0.541822
Target:  5'- cCUGacccACCUGCGCCGGGUCAugggucCCCg -3'
miRNA:   3'- -GACgucuUGGACGUGGCCCAGU------GGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.