miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1415 3' -59.7 NC_001335.1 + 16196 0.66 0.484466
Target:  5'- cGCuGGUCGGcauCG-UGGCCggucugcUGGCCGGu -3'
miRNA:   3'- -CG-CCAGCCuc-GCuACCGGa------ACCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 21924 0.66 0.474594
Target:  5'- uCGGUgGGGGCGAcUGGagCUUcGGCCa- -3'
miRNA:   3'- cGCCAgCCUCGCU-ACCg-GAA-CCGGcu -5'
1415 3' -59.7 NC_001335.1 + 20552 0.66 0.464824
Target:  5'- cGCGGUCgguGGAGCGAUugaccucccGCCUcUGGgCGGu -3'
miRNA:   3'- -CGCCAG---CCUCGCUAc--------CGGA-ACCgGCU- -5'
1415 3' -59.7 NC_001335.1 + 29170 0.66 0.464824
Target:  5'- gGCGGU-GGGGCGAaGGCUcucGCUGAg -3'
miRNA:   3'- -CGCCAgCCUCGCUaCCGGaacCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 29771 0.66 0.45516
Target:  5'- cGCGGUCGcucgccGAGaaGUGGU--UGGCCGAu -3'
miRNA:   3'- -CGCCAGC------CUCgcUACCGgaACCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 8168 0.67 0.436164
Target:  5'- cGCGGUCcuugaGGGCGA-GGUCU-GGCaCGAc -3'
miRNA:   3'- -CGCCAGc----CUCGCUaCCGGAaCCG-GCU- -5'
1415 3' -59.7 NC_001335.1 + 1674 0.68 0.390758
Target:  5'- uCGGUCGGGGUGuc-GCCaccGGCUGAg -3'
miRNA:   3'- cGCCAGCCUCGCuacCGGaa-CCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 2317 0.68 0.382054
Target:  5'- -aGGUCGGcaaggAGUGAgcugGGCCggcucaGGCCGGc -3'
miRNA:   3'- cgCCAGCC-----UCGCUa---CCGGaa----CCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 17256 0.68 0.382054
Target:  5'- --cGUCGGAGCGAgcUGcagcaccgcGCCUgcgaccUGGCCGAg -3'
miRNA:   3'- cgcCAGCCUCGCU--AC---------CGGA------ACCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 32875 0.68 0.382054
Target:  5'- cGCGGUCucaggcucaGGAGCcggGGCCggcucgGGCUGGg -3'
miRNA:   3'- -CGCCAG---------CCUCGcuaCCGGaa----CCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 47545 0.68 0.365037
Target:  5'- gGCGGuggccacaUCGGAGCuGUGGCCaaugcacugcUGGCCa- -3'
miRNA:   3'- -CGCC--------AGCCUCGcUACCGGa---------ACCGGcu -5'
1415 3' -59.7 NC_001335.1 + 38363 0.68 0.365037
Target:  5'- gGCGaGUCGcGGGC--UGGCC--GGCCGAg -3'
miRNA:   3'- -CGC-CAGC-CUCGcuACCGGaaCCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 23720 0.68 0.3642
Target:  5'- gGCGG-CGGggguaaaGGC-AUGGCCcUGGCUGAc -3'
miRNA:   3'- -CGCCaGCC-------UCGcUACCGGaACCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 8604 0.69 0.309699
Target:  5'- -gGGaCGGugacGcCGAUGGCCUcUGGCCGGc -3'
miRNA:   3'- cgCCaGCCu---C-GCUACCGGA-ACCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 18868 0.71 0.242099
Target:  5'- -gGGUCGaaccGGGUGucggucuUGGUCUUGGCCGAg -3'
miRNA:   3'- cgCCAGC----CUCGCu------ACCGGAACCGGCU- -5'
1415 3' -59.7 NC_001335.1 + 47365 1.1 0.00031
Target:  5'- aGCGGUCGGAGCGAUGGCCUUGGCCGAu -3'
miRNA:   3'- -CGCCAGCCUCGCUACCGGAACCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.