miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1415 5' -53.1 NC_001335.1 + 26946 0.66 0.843115
Target:  5'- --gCGGCUucgccuacgaGACCCAucGUCACGUaggagagacccUCGAUg -3'
miRNA:   3'- gaaGCCGG----------CUGGGU--UAGUGCA-----------AGCUG- -5'
1415 5' -53.1 NC_001335.1 + 16259 0.66 0.8342
Target:  5'- --cCGGCgcUGGCgUAGUCGCGcUCGGCa -3'
miRNA:   3'- gaaGCCG--GCUGgGUUAGUGCaAGCUG- -5'
1415 5' -53.1 NC_001335.1 + 7569 0.66 0.825066
Target:  5'- -gUCGGCCGGCgcuuCCAG-CGCGU-CGuACa -3'
miRNA:   3'- gaAGCCGGCUG----GGUUaGUGCAaGC-UG- -5'
1415 5' -53.1 NC_001335.1 + 33796 0.66 0.805221
Target:  5'- --gUGGCCGACCCGAagagccgggagguUCugGacCGAa -3'
miRNA:   3'- gaaGCCGGCUGGGUU-------------AGugCaaGCUg -5'
1415 5' -53.1 NC_001335.1 + 16514 0.67 0.796458
Target:  5'- --cCGGCCauguucacgaGGCCCGAggcCACGUUCuGCa -3'
miRNA:   3'- gaaGCCGG----------CUGGGUUa--GUGCAAGcUG- -5'
1415 5' -53.1 NC_001335.1 + 49299 0.67 0.796458
Target:  5'- aCUggcgCGGCa-ACCCGAgCGCGUaCGACg -3'
miRNA:   3'- -GAa---GCCGgcUGGGUUaGUGCAaGCUG- -5'
1415 5' -53.1 NC_001335.1 + 20050 0.67 0.795476
Target:  5'- -gUCGGUacaucaaggaccgCGACCCGcAUC-CGUUCGAa -3'
miRNA:   3'- gaAGCCG-------------GCUGGGU-UAGuGCAAGCUg -5'
1415 5' -53.1 NC_001335.1 + 27859 0.67 0.786556
Target:  5'- --aCGGUCGACCUggaGAUgCGCGUgcaGACg -3'
miRNA:   3'- gaaGCCGGCUGGG---UUA-GUGCAag-CUG- -5'
1415 5' -53.1 NC_001335.1 + 2926 0.67 0.786556
Target:  5'- -gUCGGUCGGCUCGuaguacuUCACGgcugcCGACu -3'
miRNA:   3'- gaAGCCGGCUGGGUu------AGUGCaa---GCUG- -5'
1415 5' -53.1 NC_001335.1 + 8089 0.67 0.786555
Target:  5'- --cCaGCCcgaacaACCCGGUgGCGUUCGACa -3'
miRNA:   3'- gaaGcCGGc-----UGGGUUAgUGCAAGCUG- -5'
1415 5' -53.1 NC_001335.1 + 532 0.67 0.786555
Target:  5'- aCUUCGuGCCGGCCUAucUCGCGgccUgGAa -3'
miRNA:   3'- -GAAGC-CGGCUGGGUu-AGUGCa--AgCUg -5'
1415 5' -53.1 NC_001335.1 + 33257 0.67 0.783552
Target:  5'- -gUCGGCUGACUCAacgAUCuccuCGUcccaaccgaguuccUCGACa -3'
miRNA:   3'- gaAGCCGGCUGGGU---UAGu---GCA--------------AGCUG- -5'
1415 5' -53.1 NC_001335.1 + 9093 0.67 0.776488
Target:  5'- gCUUCGGUCGAUgaCCGA-CGCGg-CGGCg -3'
miRNA:   3'- -GAAGCCGGCUG--GGUUaGUGCaaGCUG- -5'
1415 5' -53.1 NC_001335.1 + 27300 0.67 0.776488
Target:  5'- -gUUGGCCucGGCgCGGUCACGggccucguccUUCGACg -3'
miRNA:   3'- gaAGCCGG--CUGgGUUAGUGC----------AAGCUG- -5'
1415 5' -53.1 NC_001335.1 + 19848 0.67 0.766268
Target:  5'- -cUUGGCCGGCCCGAagAUGaUCcACa -3'
miRNA:   3'- gaAGCCGGCUGGGUUagUGCaAGcUG- -5'
1415 5' -53.1 NC_001335.1 + 48275 0.67 0.755906
Target:  5'- -cUCGcGCCGuACCUuGUCGCGgcCGGCc -3'
miRNA:   3'- gaAGC-CGGC-UGGGuUAGUGCaaGCUG- -5'
1415 5' -53.1 NC_001335.1 + 4813 0.67 0.745415
Target:  5'- --aCGGuuuCCGACCCAGUCG-GUgCGACc -3'
miRNA:   3'- gaaGCC---GGCUGGGUUAGUgCAaGCUG- -5'
1415 5' -53.1 NC_001335.1 + 45366 0.68 0.724091
Target:  5'- -gUCGGUgGuCCCuGUCACGcuguacgUCGACa -3'
miRNA:   3'- gaAGCCGgCuGGGuUAGUGCa------AGCUG- -5'
1415 5' -53.1 NC_001335.1 + 41406 0.68 0.713282
Target:  5'- -cUCGGCCGACUCugaUGCGUUCa-- -3'
miRNA:   3'- gaAGCCGGCUGGGuuaGUGCAAGcug -5'
1415 5' -53.1 NC_001335.1 + 31068 0.68 0.701298
Target:  5'- gUUCGGCCGGCUCGGgccggucUCAgGcUUGACc -3'
miRNA:   3'- gAAGCCGGCUGGGUU-------AGUgCaAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.