miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14151 3' -51.7 NC_003521.1 + 183892 0.66 0.993118
Target:  5'- cAUCaGCuGCAGAGCcACG-GC-CGUCACg -3'
miRNA:   3'- -UAG-CG-CGUCUUGuUGCaCGaGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 28911 0.66 0.993118
Target:  5'- -cUGCGCGacuACAACGUGCUCuUCu- -3'
miRNA:   3'- uaGCGCGUcu-UGUUGCACGAGuAGug -5'
14151 3' -51.7 NC_003521.1 + 114951 0.66 0.993118
Target:  5'- cUCGCGCAGcGGCGGC-UGCUgcggCGUCAg -3'
miRNA:   3'- uAGCGCGUC-UUGUUGcACGA----GUAGUg -5'
14151 3' -51.7 NC_003521.1 + 224797 0.67 0.992094
Target:  5'- cGUCGUGCGGGACGcGCGUGgCguagggCGUCuGCg -3'
miRNA:   3'- -UAGCGCGUCUUGU-UGCAC-Ga-----GUAG-UG- -5'
14151 3' -51.7 NC_003521.1 + 136781 0.67 0.992094
Target:  5'- -cUGCGCG--ACAGCGgGCUCAcggUCACg -3'
miRNA:   3'- uaGCGCGUcuUGUUGCaCGAGU---AGUG- -5'
14151 3' -51.7 NC_003521.1 + 193651 0.67 0.992094
Target:  5'- -aUGCGCuaucAGAuCAuCGUGCUCGUCGg -3'
miRNA:   3'- uaGCGCG----UCUuGUuGCACGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 117930 0.67 0.990953
Target:  5'- -gUGCGCAGGACGGgGgaggaggagaGCaUCAUCGCg -3'
miRNA:   3'- uaGCGCGUCUUGUUgCa---------CG-AGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 240143 0.67 0.990953
Target:  5'- --gGCGCGGAA-AGCGcugGCUCAUgGCg -3'
miRNA:   3'- uagCGCGUCUUgUUGCa--CGAGUAgUG- -5'
14151 3' -51.7 NC_003521.1 + 186989 0.67 0.990953
Target:  5'- cGUCGCGCGGAaagucagcgagaACAgaugagccACGUGCagGUCGg -3'
miRNA:   3'- -UAGCGCGUCU------------UGU--------UGCACGagUAGUg -5'
14151 3' -51.7 NC_003521.1 + 157157 0.67 0.990953
Target:  5'- -aCGCGCgAGGuCAACGUGCgCAagCGCg -3'
miRNA:   3'- uaGCGCG-UCUuGUUGCACGaGUa-GUG- -5'
14151 3' -51.7 NC_003521.1 + 169715 0.67 0.990953
Target:  5'- -cCGaCGUcccccaAGAGCGACGUGCgUCGUCGa -3'
miRNA:   3'- uaGC-GCG------UCUUGUUGCACG-AGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 127412 0.67 0.989686
Target:  5'- gGUCGUGCAGcGCGuucACGUaggccgccagcgGCUCGUCGg -3'
miRNA:   3'- -UAGCGCGUCuUGU---UGCA------------CGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 141575 0.67 0.989686
Target:  5'- cUCGCGCGcGACGACGcGCgcacCGUCAg -3'
miRNA:   3'- uAGCGCGUcUUGUUGCaCGa---GUAGUg -5'
14151 3' -51.7 NC_003521.1 + 175426 0.67 0.989686
Target:  5'- -gCGCGCGucuGAGUGGCGUGCUCGgcgUACg -3'
miRNA:   3'- uaGCGCGU---CUUGUUGCACGAGUa--GUG- -5'
14151 3' -51.7 NC_003521.1 + 134657 0.67 0.988284
Target:  5'- gGUCGCGCAGGAagaaGUGCUCc---- -3'
miRNA:   3'- -UAGCGCGUCUUguugCACGAGuagug -5'
14151 3' -51.7 NC_003521.1 + 191435 0.67 0.986739
Target:  5'- -aCGCGCAGAGCAugGacgaucUGCUgAUgAUc -3'
miRNA:   3'- uaGCGCGUCUUGUugC------ACGAgUAgUG- -5'
14151 3' -51.7 NC_003521.1 + 219277 0.67 0.986739
Target:  5'- uUCGCGUAGuACGACaugaaguucUGCUCGUCGa -3'
miRNA:   3'- uAGCGCGUCuUGUUGc--------ACGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 228741 0.67 0.986739
Target:  5'- -gCGUGguGAGCAgcgGCGUGCgCAUCu- -3'
miRNA:   3'- uaGCGCguCUUGU---UGCACGaGUAGug -5'
14151 3' -51.7 NC_003521.1 + 122045 0.67 0.986739
Target:  5'- -cCGCagcgagauGCAGGGCGACGUGCg---CACg -3'
miRNA:   3'- uaGCG--------CGUCUUGUUGCACGaguaGUG- -5'
14151 3' -51.7 NC_003521.1 + 143783 0.67 0.986739
Target:  5'- cAUCaCGCccAugAACGUGCUCAUCGa -3'
miRNA:   3'- -UAGcGCGucUugUUGCACGAGUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.