miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14151 5' -55.8 NC_003521.1 + 119450 0.67 0.953322
Target:  5'- cUCGCGAuGGAGgcgCGACAgugugaagCC-GCGCg -3'
miRNA:   3'- -GGCGCU-CCUCaa-GCUGUa-------GGaCGCGa -5'
14151 5' -55.8 NC_003521.1 + 187775 0.67 0.950982
Target:  5'- gCGCGAGGAGcugggcuggacccacUUCGACAgcggcggcgaCCUGgGUUg -3'
miRNA:   3'- gGCGCUCCUC---------------AAGCUGUa---------GGACgCGA- -5'
14151 5' -55.8 NC_003521.1 + 100732 0.67 0.949379
Target:  5'- -gGCGGGGGGUucaugUCGuCGUCCgGgGCUu -3'
miRNA:   3'- ggCGCUCCUCA-----AGCuGUAGGaCgCGA- -5'
14151 5' -55.8 NC_003521.1 + 140508 0.67 0.945221
Target:  5'- cCCGCGucacucagcGGGGUcUCGACGUCacuCUGUGCc -3'
miRNA:   3'- -GGCGCu--------CCUCA-AGCUGUAG---GACGCGa -5'
14151 5' -55.8 NC_003521.1 + 170867 0.67 0.945221
Target:  5'- uCCGCGGGGgcgggcgcgGGUggucaGGCGUCCgGCGUc -3'
miRNA:   3'- -GGCGCUCC---------UCAag---CUGUAGGaCGCGa -5'
14151 5' -55.8 NC_003521.1 + 124813 0.67 0.940845
Target:  5'- aCCGCGGccuGGAGacgCuGC-UCCUGCGCg -3'
miRNA:   3'- -GGCGCU---CCUCaa-GcUGuAGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 208894 0.67 0.936249
Target:  5'- aCCcCGAGGAGcgCGAgGUCaucGCGCg -3'
miRNA:   3'- -GGcGCUCCUCaaGCUgUAGga-CGCGa -5'
14151 5' -55.8 NC_003521.1 + 149350 0.68 0.931432
Target:  5'- gCGCGAGG---UCuGCuUCCUGCGCa -3'
miRNA:   3'- gGCGCUCCucaAGcUGuAGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 115853 0.68 0.931432
Target:  5'- gCCGCGuGGAGggCaACcagAUCCUGCuGCa -3'
miRNA:   3'- -GGCGCuCCUCaaGcUG---UAGGACG-CGa -5'
14151 5' -55.8 NC_003521.1 + 18219 0.68 0.926392
Target:  5'- gCCGC--GGAGUUCcGCGagCUGCGCg -3'
miRNA:   3'- -GGCGcuCCUCAAGcUGUagGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 103207 0.68 0.921131
Target:  5'- gCGCGAGcGGUa-GGCGUCCaGCGCg -3'
miRNA:   3'- gGCGCUCcUCAagCUGUAGGaCGCGa -5'
14151 5' -55.8 NC_003521.1 + 49083 0.68 0.921131
Target:  5'- aCCGuCGGacGGGGggCGAUAUCCacaaagUGCGCg -3'
miRNA:   3'- -GGC-GCU--CCUCaaGCUGUAGG------ACGCGa -5'
14151 5' -55.8 NC_003521.1 + 101118 0.68 0.921131
Target:  5'- cCCGCGAGGGGggcgggUCGGCGggcaCgcggaaaGCGCg -3'
miRNA:   3'- -GGCGCUCCUCa-----AGCUGUag--Ga------CGCGa -5'
14151 5' -55.8 NC_003521.1 + 113184 0.68 0.921131
Target:  5'- gCCGCGAGGuGcccgucUUCGugcacgagcaGCAguaCCUGCGCUc -3'
miRNA:   3'- -GGCGCUCCuC------AAGC----------UGUa--GGACGCGA- -5'
14151 5' -55.8 NC_003521.1 + 155174 0.68 0.906416
Target:  5'- uCgGCGAccugcucaaguacauGGAGUUCGGCAUCC--CGCUc -3'
miRNA:   3'- -GgCGCU---------------CCUCAAGCUGUAGGacGCGA- -5'
14151 5' -55.8 NC_003521.1 + 60514 0.68 0.904021
Target:  5'- cCCGgGAGGAGcugcaCGGCAUCUgggagacgGUGCUg -3'
miRNA:   3'- -GGCgCUCCUCaa---GCUGUAGGa-------CGCGA- -5'
14151 5' -55.8 NC_003521.1 + 132392 0.68 0.90281
Target:  5'- cCCGCGAGGucaucCGGCAgacgcuguuucgCCUGUGCg -3'
miRNA:   3'- -GGCGCUCCucaa-GCUGUa-----------GGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 72986 0.69 0.89788
Target:  5'- gCCGCGGGGGGccUGGCcgcUCCUGCucugGCUg -3'
miRNA:   3'- -GGCGCUCCUCaaGCUGu--AGGACG----CGA- -5'
14151 5' -55.8 NC_003521.1 + 111383 0.69 0.891525
Target:  5'- -gGCGAGGAgauGUUCGAgG-CgCUGCGCa -3'
miRNA:   3'- ggCGCUCCU---CAAGCUgUaG-GACGCGa -5'
14151 5' -55.8 NC_003521.1 + 223956 0.69 0.884957
Target:  5'- gCCGCGGGGAacgcacGUcguaGACGUCCgccUGCGCc -3'
miRNA:   3'- -GGCGCUCCU------CAag--CUGUAGG---ACGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.