miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14152 3' -59.5 NC_003521.1 + 32206 0.66 0.895018
Target:  5'- cUCACCGc----GGUGACugGCUAUGGCCg -3'
miRNA:   3'- -AGUGGCucuucCCGCUG--CGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 72420 0.66 0.895018
Target:  5'- gCACUGAGGaagAGGGCGAguccuCGCCGuCGucGUCg -3'
miRNA:   3'- aGUGGCUCU---UCCCGCU-----GCGGU-GC--CGG- -5'
14152 3' -59.5 NC_003521.1 + 215260 0.66 0.895018
Target:  5'- -gGCCGccaacagcuGGAAGGGCGAgaUGCagagGCaGGCCa -3'
miRNA:   3'- agUGGC---------UCUUCCCGCU--GCGg---UG-CCGG- -5'
14152 3' -59.5 NC_003521.1 + 132419 0.66 0.895018
Target:  5'- uUCGCCugu--GcGGCGACGCCGCuGGUa -3'
miRNA:   3'- -AGUGGcucuuC-CCGCUGCGGUG-CCGg -5'
14152 3' -59.5 NC_003521.1 + 114033 0.66 0.895018
Target:  5'- gCGCgGAGcuGGaccacGCGcaGCGCCAgGGCCu -3'
miRNA:   3'- aGUGgCUCuuCC-----CGC--UGCGGUgCCGG- -5'
14152 3' -59.5 NC_003521.1 + 123632 0.66 0.895018
Target:  5'- cCACCGccucGGGCGGCggcaGCgACGGCg -3'
miRNA:   3'- aGUGGCucuuCCCGCUG----CGgUGCCGg -5'
14152 3' -59.5 NC_003521.1 + 220147 0.66 0.895018
Target:  5'- --cCCGuGAAGGuGaugaacaGCGCCACGGUCa -3'
miRNA:   3'- aguGGCuCUUCC-Cgc-----UGCGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 29225 0.66 0.895018
Target:  5'- cUCAUgGAGAuccucuacuGGGCcuccaGCCGCGGCg -3'
miRNA:   3'- -AGUGgCUCUu--------CCCGcug--CGGUGCCGg -5'
14152 3' -59.5 NC_003521.1 + 172378 0.66 0.895018
Target:  5'- gCACCGuguguuccaucaGGAAGGGCGugGaCAgGGaCa -3'
miRNA:   3'- aGUGGC------------UCUUCCCGCugCgGUgCCgG- -5'
14152 3' -59.5 NC_003521.1 + 212717 0.66 0.895018
Target:  5'- -gGCCucGAucuuGGGCGAgCGCCugcuCGGCUu -3'
miRNA:   3'- agUGGcuCUu---CCCGCU-GCGGu---GCCGG- -5'
14152 3' -59.5 NC_003521.1 + 183409 0.66 0.895018
Target:  5'- gUC-CgCGAGAcgguGGGCGAC-CgCACGGCg -3'
miRNA:   3'- -AGuG-GCUCUu---CCCGCUGcG-GUGCCGg -5'
14152 3' -59.5 NC_003521.1 + 132430 0.66 0.895018
Target:  5'- aCACgGGGucGGGUuagcgugcGGCGCCugucUGGCCu -3'
miRNA:   3'- aGUGgCUCuuCCCG--------CUGCGGu---GCCGG- -5'
14152 3' -59.5 NC_003521.1 + 46336 0.66 0.895018
Target:  5'- ---gCGAGGAGGGCG-CGUCGuCGGaCg -3'
miRNA:   3'- agugGCUCUUCCCGCuGCGGU-GCCgG- -5'
14152 3' -59.5 NC_003521.1 + 84880 0.66 0.895018
Target:  5'- cCGCCcGGuccGGGUGGCGCgAguaGGCCg -3'
miRNA:   3'- aGUGGcUCuu-CCCGCUGCGgUg--CCGG- -5'
14152 3' -59.5 NC_003521.1 + 118714 0.66 0.895018
Target:  5'- cUCAUgGGcGAGGGGCG-CGgCAcCGGCa -3'
miRNA:   3'- -AGUGgCU-CUUCCCGCuGCgGU-GCCGg -5'
14152 3' -59.5 NC_003521.1 + 49604 0.66 0.895018
Target:  5'- gUCACCGGcGcuGGG-GACGCggaggaCACGGCg -3'
miRNA:   3'- -AGUGGCU-CuuCCCgCUGCG------GUGCCGg -5'
14152 3' -59.5 NC_003521.1 + 117053 0.66 0.895018
Target:  5'- uUCGcCCGAGgcGGccGCGGaGCCGgCGGUCa -3'
miRNA:   3'- -AGU-GGCUCuuCC--CGCUgCGGU-GCCGG- -5'
14152 3' -59.5 NC_003521.1 + 236142 0.66 0.895018
Target:  5'- ---aCGGGggGGaccgcGCGACGUCGcCGGCg -3'
miRNA:   3'- agugGCUCuuCC-----CGCUGCGGU-GCCGg -5'
14152 3' -59.5 NC_003521.1 + 46381 0.66 0.894399
Target:  5'- -gGCUGuGAGGGGCGcggggugcgugggGCGCgCG-GGCCa -3'
miRNA:   3'- agUGGCuCUUCCCGC-------------UGCG-GUgCCGG- -5'
14152 3' -59.5 NC_003521.1 + 207113 0.66 0.893155
Target:  5'- gUugCGGGAGcgcuuGGGCGgaguccagcuGCagcguuacgugcggGCCACGGCCg -3'
miRNA:   3'- aGugGCUCUU-----CCCGC----------UG--------------CGGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.