miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14152 3' -59.5 NC_003521.1 + 28849 0.66 0.861657
Target:  5'- aCGaCGAGcuGcGGCGGCGCggCACGGUCg -3'
miRNA:   3'- aGUgGCUCuuC-CCGCUGCG--GUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 218705 0.66 0.87558
Target:  5'- -gGCgGAGGAGacGGCGGCGgCgGCGGgCg -3'
miRNA:   3'- agUGgCUCUUC--CCGCUGC-GgUGCCgG- -5'
14152 3' -59.5 NC_003521.1 + 32720 0.66 0.868712
Target:  5'- -gGgUGGGggGuuGGCGACGCCACcagcgGGCg -3'
miRNA:   3'- agUgGCUCuuC--CCGCUGCGGUG-----CCGg -5'
14152 3' -59.5 NC_003521.1 + 71658 0.66 0.866615
Target:  5'- -gGCCGAGuuGGaGCGGCGCacCACGcacuuggugagcacGCCg -3'
miRNA:   3'- agUGGCUCuuCC-CGCUGCG--GUGC--------------CGG- -5'
14152 3' -59.5 NC_003521.1 + 214987 0.66 0.868712
Target:  5'- -gGCCaGGggGGuGCGA-GCCAgCGGCg -3'
miRNA:   3'- agUGGcUCuuCC-CGCUgCGGU-GCCGg -5'
14152 3' -59.5 NC_003521.1 + 68528 0.66 0.868712
Target:  5'- cCACCGAcaccGGAcGGCGGCa--GCGGCCg -3'
miRNA:   3'- aGUGGCU----CUUcCCGCUGcggUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 120297 0.66 0.859505
Target:  5'- cCGCCGAGGGcccuuccccGGGCGAaggagaucgagacaUGCgGUGGCCg -3'
miRNA:   3'- aGUGGCUCUU---------CCCGCU--------------GCGgUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 168118 0.66 0.87354
Target:  5'- gCGcCCGGGGuccuGGUggaagaacuugaagGugGCCACGGCCu -3'
miRNA:   3'- aGU-GGCUCUuc--CCG--------------CugCGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 233381 0.66 0.868712
Target:  5'- gUCGCCGGGAuccGGaGC--UGCCGCuGCCg -3'
miRNA:   3'- -AGUGGCUCUu--CC-CGcuGCGGUGcCGG- -5'
14152 3' -59.5 NC_003521.1 + 47561 0.66 0.861657
Target:  5'- -aGCgGGGAAGacGGCGAgcggGCCACGGUg -3'
miRNA:   3'- agUGgCUCUUC--CCGCUg---CGGUGCCGg -5'
14152 3' -59.5 NC_003521.1 + 143393 0.66 0.868712
Target:  5'- aCGCCGuGGAccuGaGCGAcgagagcuuuCGCCugGGCCa -3'
miRNA:   3'- aGUGGCuCUUc--C-CGCU----------GCGGugCCGG- -5'
14152 3' -59.5 NC_003521.1 + 204745 0.66 0.871482
Target:  5'- aUCACC-AGGGcGGUGACGCuCaaugcguagaacaggACGGCCa -3'
miRNA:   3'- -AGUGGcUCUUcCCGCUGCG-G---------------UGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 55635 0.66 0.871482
Target:  5'- aCACCGA---GGGCGucacgcuccacagguGCGCCACcucgucgucgGGCCc -3'
miRNA:   3'- aGUGGCUcuuCCCGC---------------UGCGGUG----------CCGG- -5'
14152 3' -59.5 NC_003521.1 + 201259 0.66 0.860941
Target:  5'- aCGCCGcgcagccAGAuGGcCGGCGUCGgGGCCa -3'
miRNA:   3'- aGUGGC-------UCUuCCcGCUGCGGUgCCGG- -5'
14152 3' -59.5 NC_003521.1 + 114672 0.66 0.868712
Target:  5'- aCAaCGAcAAGcGCGACGCCGCcuGGCCc -3'
miRNA:   3'- aGUgGCUcUUCcCGCUGCGGUG--CCGG- -5'
14152 3' -59.5 NC_003521.1 + 163730 0.66 0.868712
Target:  5'- gCGUCGGGAuGaGCGGCGCCGgCGGCa -3'
miRNA:   3'- aGUGGCUCUuCcCGCUGCGGU-GCCGg -5'
14152 3' -59.5 NC_003521.1 + 73636 0.66 0.868712
Target:  5'- -aGCCcaagcAGAAGGcCucCGCCGCGGCCg -3'
miRNA:   3'- agUGGc----UCUUCCcGcuGCGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 77399 0.66 0.874902
Target:  5'- gCACCcuGGuAGGcaGCGGCagccgacgacgggGCCACGGCCg -3'
miRNA:   3'- aGUGGc-UCuUCC--CGCUG-------------CGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 236142 0.66 0.895018
Target:  5'- ---aCGGGggGGaccgcGCGACGUCGcCGGCg -3'
miRNA:   3'- agugGCUCuuCC-----CGCUGCGGU-GCCGg -5'
14152 3' -59.5 NC_003521.1 + 98876 0.66 0.868712
Target:  5'- cCGCCGcucgugcuaGGGGGCGccguCGUCGCGGCg -3'
miRNA:   3'- aGUGGCuc-------UUCCCGCu---GCGGUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.