miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14152 3' -59.5 NC_003521.1 + 131125 0.73 0.483359
Target:  5'- -uGCCGGGAAGGgacagcGCGACcCCuCGGCCg -3'
miRNA:   3'- agUGGCUCUUCC------CGCUGcGGuGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 75840 0.74 0.439852
Target:  5'- cUCGCCcucGGGAAgauGGGCGAcagcacguuCGUCACGGCCu -3'
miRNA:   3'- -AGUGG---CUCUU---CCCGCU---------GCGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 209724 0.74 0.439852
Target:  5'- --uCCGAGGAGGucgugcgcaGCGGCaGCCACGGCa -3'
miRNA:   3'- aguGGCUCUUCC---------CGCUG-CGGUGCCGg -5'
14152 3' -59.5 NC_003521.1 + 75604 0.74 0.439852
Target:  5'- uUCGCguuc--GGGCGGCGCCACGGCUc -3'
miRNA:   3'- -AGUGgcucuuCCCGCUGCGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 112907 0.74 0.448377
Target:  5'- aUCGCCGccuGGGAGGGCccCGUCACGGgCa -3'
miRNA:   3'- -AGUGGC---UCUUCCCGcuGCGGUGCCgG- -5'
14152 3' -59.5 NC_003521.1 + 100693 0.74 0.456994
Target:  5'- -uGCUGAuGcGGaGGCGcCGCCGCGGCCg -3'
miRNA:   3'- agUGGCU-CuUC-CCGCuGCGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 46062 0.74 0.456994
Target:  5'- gCACCGGGcGGGaugaggucGCGACGCC-CGGCg -3'
miRNA:   3'- aGUGGCUCuUCC--------CGCUGCGGuGCCGg -5'
14152 3' -59.5 NC_003521.1 + 168407 0.74 0.456994
Target:  5'- cCGCCGuugguggcuaGGgcGGGCGGCaggGCCGCGGCg -3'
miRNA:   3'- aGUGGC----------UCuuCCCGCUG---CGGUGCCGg -5'
14152 3' -59.5 NC_003521.1 + 115841 0.74 0.473604
Target:  5'- gCGCUGgcucAGgcGGGCGGCGCacgccucgucaaaCACGGCCg -3'
miRNA:   3'- aGUGGC----UCuuCCCGCUGCG-------------GUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 155992 0.74 0.43142
Target:  5'- cCACCGAGGAGGcGCuGCGCgAgcUGGCCc -3'
miRNA:   3'- aGUGGCUCUUCC-CGcUGCGgU--GCCGG- -5'
14152 3' -59.5 NC_003521.1 + 115383 0.75 0.390728
Target:  5'- -gGCCGgcaugugcAGGGcgcGGGCGGcCGCCACGGCCu -3'
miRNA:   3'- agUGGC--------UCUU---CCCGCU-GCGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 160441 0.76 0.375167
Target:  5'- aCGCCGA--AGGcGCGACGgCACGGCa -3'
miRNA:   3'- aGUGGCUcuUCC-CGCUGCgGUGCCGg -5'
14152 3' -59.5 NC_003521.1 + 165010 0.8 0.222173
Target:  5'- cCAgCGAGGAGGccGCGAuCGCCGCGGCUu -3'
miRNA:   3'- aGUgGCUCUUCC--CGCU-GCGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 97599 0.8 0.227328
Target:  5'- cCGCCGAGAAGacacGGCGACgGCUcCGGCCu -3'
miRNA:   3'- aGUGGCUCUUC----CCGCUG-CGGuGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 56461 0.78 0.260407
Target:  5'- --uCCGAGAGGcGCcGCGCCACGGCCc -3'
miRNA:   3'- aguGGCUCUUCcCGcUGCGGUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 213739 0.78 0.284574
Target:  5'- gCGCCGcAGAAGGcCGugGUgGCGGCCa -3'
miRNA:   3'- aGUGGC-UCUUCCcGCugCGgUGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 168511 0.77 0.317228
Target:  5'- -gGCgGAGGAcGGCGACGCCagcaggcugGCGGCCa -3'
miRNA:   3'- agUGgCUCUUcCCGCUGCGG---------UGCCGG- -5'
14152 3' -59.5 NC_003521.1 + 124650 0.76 0.352624
Target:  5'- aUCACCGGGucGGGCagcgugaagguGGCGUCGCGGUa -3'
miRNA:   3'- -AGUGGCUCuuCCCG-----------CUGCGGUGCCGg -5'
14152 3' -59.5 NC_003521.1 + 131208 0.76 0.370581
Target:  5'- aCGgCGAGAGGGGcCGGCGCCagagacagcgucgcgACGGCg -3'
miRNA:   3'- aGUgGCUCUUCCC-GCUGCGG---------------UGCCGg -5'
14152 3' -59.5 NC_003521.1 + 148902 0.76 0.375167
Target:  5'- aCGCCGAGGA--GCGcCGCCGCGGCa -3'
miRNA:   3'- aGUGGCUCUUccCGCuGCGGUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.