miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14152 5' -55 NC_003521.1 + 53443 0.65 0.977294
Target:  5'- -aGGCUGUugccGCu-GCUCACCgUCGUCGg -3'
miRNA:   3'- ggCCGACG----UGuuCGGGUGGaAGUAGU- -5'
14152 5' -55 NC_003521.1 + 6900 0.65 0.977294
Target:  5'- cUCGGCcugggGCGCGGGUu--CCUUCAUCGc -3'
miRNA:   3'- -GGCCGa----CGUGUUCGgguGGAAGUAGU- -5'
14152 5' -55 NC_003521.1 + 53969 0.65 0.977294
Target:  5'- gCCGuGCUGCACGccgccgcuGGgCCGCCaUUCG-CAg -3'
miRNA:   3'- -GGC-CGACGUGU--------UCgGGUGG-AAGUaGU- -5'
14152 5' -55 NC_003521.1 + 115562 0.65 0.977294
Target:  5'- gCCGuGCUGCGCGGacguugaucucGCCC-CCgugcgCGUCGu -3'
miRNA:   3'- -GGC-CGACGUGUU-----------CGGGuGGaa---GUAGU- -5'
14152 5' -55 NC_003521.1 + 26852 0.65 0.977294
Target:  5'- cCCGGUagauaGCACGGcccgagccggcGCCCACCcgCGUCu -3'
miRNA:   3'- -GGCCGa----CGUGUU-----------CGGGUGGaaGUAGu -5'
14152 5' -55 NC_003521.1 + 226849 0.65 0.977294
Target:  5'- gCCGcGCcGgGCAGGCCCAUCagggCGUCc -3'
miRNA:   3'- -GGC-CGaCgUGUUCGGGUGGaa--GUAGu -5'
14152 5' -55 NC_003521.1 + 53211 0.65 0.977294
Target:  5'- cCCGGCUcGCccugGCAGgccguGCCCACCggCAgCAg -3'
miRNA:   3'- -GGCCGA-CG----UGUU-----CGGGUGGaaGUaGU- -5'
14152 5' -55 NC_003521.1 + 84531 0.65 0.977294
Target:  5'- aUGGUUGCACAgcaAGCCCugCagCcgCu -3'
miRNA:   3'- gGCCGACGUGU---UCGGGugGaaGuaGu -5'
14152 5' -55 NC_003521.1 + 224026 0.65 0.977059
Target:  5'- cCCGGCggucgGgGCGGGCgCCGucgccccugggacUCUUCGUCAc -3'
miRNA:   3'- -GGCCGa----CgUGUUCG-GGU-------------GGAAGUAGU- -5'
14152 5' -55 NC_003521.1 + 133380 0.66 0.974856
Target:  5'- gCCGGCacaGCGCGgcGGUCCGCgCUUUcgCGu -3'
miRNA:   3'- -GGCCGa--CGUGU--UCGGGUG-GAAGuaGU- -5'
14152 5' -55 NC_003521.1 + 7680 0.66 0.974856
Target:  5'- gCCGGCggGCACGAaCCCGCCcccCAa-- -3'
miRNA:   3'- -GGCCGa-CGUGUUcGGGUGGaa-GUagu -5'
14152 5' -55 NC_003521.1 + 119780 0.66 0.974856
Target:  5'- uCCaGGCUGC---GGUCCACCUUCcggCGc -3'
miRNA:   3'- -GG-CCGACGuguUCGGGUGGAAGua-GU- -5'
14152 5' -55 NC_003521.1 + 129622 0.66 0.974856
Target:  5'- uCCGGCgccaucGC-CcAGCCCACCgUCcgCGg -3'
miRNA:   3'- -GGCCGa-----CGuGuUCGGGUGGaAGuaGU- -5'
14152 5' -55 NC_003521.1 + 111245 0.66 0.974856
Target:  5'- gCCGGCgcgGCGCGgcggAGCa-GCCaUCGUCGg -3'
miRNA:   3'- -GGCCGa--CGUGU----UCGggUGGaAGUAGU- -5'
14152 5' -55 NC_003521.1 + 193392 0.66 0.974856
Target:  5'- cCCGGCUGCAUguGCCCugGCCc------ -3'
miRNA:   3'- -GGCCGACGUGuuCGGG--UGGaaguagu -5'
14152 5' -55 NC_003521.1 + 112740 0.66 0.974856
Target:  5'- gUCGcGCUuccaGCGCGAGCCCAUgggCggCAUCGg -3'
miRNA:   3'- -GGC-CGA----CGUGUUCGGGUG---GaaGUAGU- -5'
14152 5' -55 NC_003521.1 + 196174 0.66 0.974346
Target:  5'- gCCGGUUGCACuucuccaacaCCCACaggcgCAUCAu -3'
miRNA:   3'- -GGCCGACGUGuuc-------GGGUGgaa--GUAGU- -5'
14152 5' -55 NC_003521.1 + 31295 0.66 0.974089
Target:  5'- cCCGGCguugcacgggguucUGCGCGAGUCC-CUUgcgcagCAUCGc -3'
miRNA:   3'- -GGCCG--------------ACGUGUUCGGGuGGAa-----GUAGU- -5'
14152 5' -55 NC_003521.1 + 213722 0.66 0.974089
Target:  5'- aCCGGcCUGCGCGccgucgagAGCCUgcacugccugcgcuACCUgggcUCGUCGc -3'
miRNA:   3'- -GGCC-GACGUGU--------UCGGG--------------UGGA----AGUAGU- -5'
14152 5' -55 NC_003521.1 + 120039 0.66 0.972232
Target:  5'- gCUGGUcGCGCucGCCCACCgcgCAg-- -3'
miRNA:   3'- -GGCCGaCGUGuuCGGGUGGaa-GUagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.