miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14154 3' -53.6 NC_003521.1 + 194203 0.66 0.992856
Target:  5'- -gUCUACCGCCUggCUGAGg-ACGUCGu -3'
miRNA:   3'- cgAGGUGGUGGAg-GACUUagUGCAGC- -5'
14154 3' -53.6 NC_003521.1 + 194412 0.66 0.992856
Target:  5'- cGCccgUCGCCGCUUCCUGGccCGCG-CGc -3'
miRNA:   3'- -CGa--GGUGGUGGAGGACUuaGUGCaGC- -5'
14154 3' -53.6 NC_003521.1 + 32425 0.66 0.992856
Target:  5'- gGCg-CACgGCCUCCUGAcgGUUACGg-- -3'
miRNA:   3'- -CGagGUGgUGGAGGACU--UAGUGCagc -5'
14154 3' -53.6 NC_003521.1 + 53135 0.66 0.991842
Target:  5'- aGgUCCugCGCgauggUCUUGAAcCACGUCGg -3'
miRNA:   3'- -CgAGGugGUGg----AGGACUUaGUGCAGC- -5'
14154 3' -53.6 NC_003521.1 + 61963 0.66 0.991842
Target:  5'- cGCUCUACUGCC-CgCUGAcuuUCcCGUCGc -3'
miRNA:   3'- -CGAGGUGGUGGaG-GACUu--AGuGCAGC- -5'
14154 3' -53.6 NC_003521.1 + 163124 0.66 0.991842
Target:  5'- --aCCGCCGCCUCCUcGGgcAUC-UGUCu -3'
miRNA:   3'- cgaGGUGGUGGAGGA-CU--UAGuGCAGc -5'
14154 3' -53.6 NC_003521.1 + 217275 0.66 0.991842
Target:  5'- --aUCACgGCCUCgCUGAAgcugCAUGUCa -3'
miRNA:   3'- cgaGGUGgUGGAG-GACUUa---GUGCAGc -5'
14154 3' -53.6 NC_003521.1 + 156402 0.66 0.991842
Target:  5'- cGCUUCGCCACCcugCCg----CugGUCa -3'
miRNA:   3'- -CGAGGUGGUGGa--GGacuuaGugCAGc -5'
14154 3' -53.6 NC_003521.1 + 28262 0.66 0.991842
Target:  5'- cGCUCuCACCACCcucccCCUGg--C-CGUCGu -3'
miRNA:   3'- -CGAG-GUGGUGGa----GGACuuaGuGCAGC- -5'
14154 3' -53.6 NC_003521.1 + 138846 0.66 0.990717
Target:  5'- aGCUgCACCGCCUgCUGGAcccCAUcUCGc -3'
miRNA:   3'- -CGAgGUGGUGGAgGACUUa--GUGcAGC- -5'
14154 3' -53.6 NC_003521.1 + 149309 0.66 0.990717
Target:  5'- cGCUCCGcCCACCUCCauUGccUguUGUUGg -3'
miRNA:   3'- -CGAGGU-GGUGGAGG--ACuuAguGCAGC- -5'
14154 3' -53.6 NC_003521.1 + 101670 0.66 0.990717
Target:  5'- gGCUCCuCCACCUUCaccaGAucccaCACGUCc -3'
miRNA:   3'- -CGAGGuGGUGGAGGa---CUua---GUGCAGc -5'
14154 3' -53.6 NC_003521.1 + 145093 0.66 0.990717
Target:  5'- gGCUCaGCCGCCUgCUGGAcCugG-CGc -3'
miRNA:   3'- -CGAGgUGGUGGAgGACUUaGugCaGC- -5'
14154 3' -53.6 NC_003521.1 + 167279 0.66 0.990717
Target:  5'- cCUCgaaCACCACCUCCgucugcgacGGAUCcuCGUCGc -3'
miRNA:   3'- cGAG---GUGGUGGAGGa--------CUUAGu-GCAGC- -5'
14154 3' -53.6 NC_003521.1 + 133593 0.66 0.990599
Target:  5'- -gUCCACCAUCUacggaacCCUGAAccUCACaUCGc -3'
miRNA:   3'- cgAGGUGGUGGA-------GGACUU--AGUGcAGC- -5'
14154 3' -53.6 NC_003521.1 + 162968 0.66 0.989986
Target:  5'- gGCgCCAUCGCCcgUCUGGccaagauccccaugcGUCGCGUCa -3'
miRNA:   3'- -CGaGGUGGUGGa-GGACU---------------UAGUGCAGc -5'
14154 3' -53.6 NC_003521.1 + 162639 0.66 0.989474
Target:  5'- cGCUCCGCaCGCCguuucgCCaUGGAUCcgcagacucCGUCGu -3'
miRNA:   3'- -CGAGGUG-GUGGa-----GG-ACUUAGu--------GCAGC- -5'
14154 3' -53.6 NC_003521.1 + 52895 0.66 0.989474
Target:  5'- gGUUUgGCCACCauUCaaGAcgCACGUCGu -3'
miRNA:   3'- -CGAGgUGGUGG--AGgaCUuaGUGCAGC- -5'
14154 3' -53.6 NC_003521.1 + 212106 0.66 0.989474
Target:  5'- gGCgUgCGCCACCaUCUGGcgCACgGUCGg -3'
miRNA:   3'- -CG-AgGUGGUGGaGGACUuaGUG-CAGC- -5'
14154 3' -53.6 NC_003521.1 + 72020 0.66 0.989474
Target:  5'- gGUUaCUACCACaCUCUgaccaUGGAUCACGcCGa -3'
miRNA:   3'- -CGA-GGUGGUG-GAGG-----ACUUAGUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.