miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14154 5' -56.5 NC_003521.1 + 228591 0.66 0.955309
Target:  5'- uGUCGGCGUGCccgcagagCAUGAGG-GGCc-- -3'
miRNA:   3'- -CGGCCGCACGca------GUACUCCaUCGaca -5'
14154 5' -56.5 NC_003521.1 + 103805 0.66 0.955309
Target:  5'- uCCGGCGagaugaccgUGCGgaac-AGGUGGCUGUa -3'
miRNA:   3'- cGGCCGC---------ACGCaguacUCCAUCGACA- -5'
14154 5' -56.5 NC_003521.1 + 182049 0.66 0.955309
Target:  5'- cGCCGGCGcGCGcCGcccUGcaGUGGCUGg -3'
miRNA:   3'- -CGGCCGCaCGCaGU---ACucCAUCGACa -5'
14154 5' -56.5 NC_003521.1 + 179055 0.66 0.955309
Target:  5'- aGCCGGCG-GCgGUCccgGUGAcGGggaacGGCUGa -3'
miRNA:   3'- -CGGCCGCaCG-CAG---UACU-CCa----UCGACa -5'
14154 5' -56.5 NC_003521.1 + 136097 0.66 0.951453
Target:  5'- gGCuCGGUGUGCGUCAaGAcGGgacuGgUGUa -3'
miRNA:   3'- -CG-GCCGCACGCAGUaCU-CCau--CgACA- -5'
14154 5' -56.5 NC_003521.1 + 130239 0.66 0.951453
Target:  5'- gGCCGcGUGcuggGCGUCAgUGAGGUGGaCg-- -3'
miRNA:   3'- -CGGC-CGCa---CGCAGU-ACUCCAUC-Gaca -5'
14154 5' -56.5 NC_003521.1 + 108674 0.66 0.951453
Target:  5'- cUUGGUGUGCGcCGUcAGGUucuuGCUGUa -3'
miRNA:   3'- cGGCCGCACGCaGUAcUCCAu---CGACA- -5'
14154 5' -56.5 NC_003521.1 + 167402 0.66 0.951453
Target:  5'- cGUCGGCGUGCagGUCGggGAaGUGGCg-- -3'
miRNA:   3'- -CGGCCGCACG--CAGUa-CUcCAUCGaca -5'
14154 5' -56.5 NC_003521.1 + 109005 0.66 0.947381
Target:  5'- uGuuGGUGUGCGagaUCAUGcAGGggaAGUUGg -3'
miRNA:   3'- -CggCCGCACGC---AGUAC-UCCa--UCGACa -5'
14154 5' -56.5 NC_003521.1 + 192040 0.66 0.946116
Target:  5'- cGCCGGCGUgcgcggcagacgcgGCGUCcgcggcgguuuGUGAGGcgucGGCUuGUg -3'
miRNA:   3'- -CGGCCGCA--------------CGCAG-----------UACUCCa---UCGA-CA- -5'
14154 5' -56.5 NC_003521.1 + 198078 0.66 0.943089
Target:  5'- gGCCGGa-UGCGUUGUGGGG-GGCg-- -3'
miRNA:   3'- -CGGCCgcACGCAGUACUCCaUCGaca -5'
14154 5' -56.5 NC_003521.1 + 45065 0.66 0.943089
Target:  5'- uGCCaGGCaacgcGCGUCcugcGUGAGGUGGCg-- -3'
miRNA:   3'- -CGG-CCGca---CGCAG----UACUCCAUCGaca -5'
14154 5' -56.5 NC_003521.1 + 98934 0.66 0.943089
Target:  5'- cGCaCGGcCGUGCGcaUCAcacUGAgggccuGGUGGCUGg -3'
miRNA:   3'- -CG-GCC-GCACGC--AGU---ACU------CCAUCGACa -5'
14154 5' -56.5 NC_003521.1 + 39586 0.66 0.943089
Target:  5'- uGCCGGCGUcgGCgGUCcUGcccuGGGUGGCg-- -3'
miRNA:   3'- -CGGCCGCA--CG-CAGuAC----UCCAUCGaca -5'
14154 5' -56.5 NC_003521.1 + 174279 0.66 0.941758
Target:  5'- gGUCGGUGaagcGCGUCuUGAGGUcggcgaucuuguccAGCUGc -3'
miRNA:   3'- -CGGCCGCa---CGCAGuACUCCA--------------UCGACa -5'
14154 5' -56.5 NC_003521.1 + 54927 0.66 0.938575
Target:  5'- cGCCGGCGUGgGcagaaaaGUGAcGGUGGUg-- -3'
miRNA:   3'- -CGGCCGCACgCag-----UACU-CCAUCGaca -5'
14154 5' -56.5 NC_003521.1 + 195195 0.66 0.938575
Target:  5'- aGCCGGCGgcgguggccgucUGCGUCGgcgcUGAugucGGU-GCUGg -3'
miRNA:   3'- -CGGCCGC------------ACGCAGU----ACU----CCAuCGACa -5'
14154 5' -56.5 NC_003521.1 + 31017 0.67 0.928876
Target:  5'- cGCCGGCGaggacGCGuUCGUGGuGGUGGggGg -3'
miRNA:   3'- -CGGCCGCa----CGC-AGUACU-CCAUCgaCa -5'
14154 5' -56.5 NC_003521.1 + 165153 0.67 0.928876
Target:  5'- uGCCGGCGUGauggugGUgAUGAuGGUGggacugcgccGCUGUu -3'
miRNA:   3'- -CGGCCGCACg-----CAgUACU-CCAU----------CGACA- -5'
14154 5' -56.5 NC_003521.1 + 148438 0.67 0.92369
Target:  5'- cGCCGGCG-GC-UCcaGGGGUGGCcgGUg -3'
miRNA:   3'- -CGGCCGCaCGcAGuaCUCCAUCGa-CA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.