miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14156 3' -55.1 NC_003521.1 + 49602 0.66 0.981616
Target:  5'- gCGUcACCGGcGCugG-GGAcGCGGAgGa -3'
miRNA:   3'- -GCA-UGGUCuCGugCaCCUuCGCCUgC- -5'
14156 3' -55.1 NC_003521.1 + 160211 0.66 0.981616
Target:  5'- gCGUGUCA-AGUACGUGGAGGacaaGGugGu -3'
miRNA:   3'- -GCAUGGUcUCGUGCACCUUCg---CCugC- -5'
14156 3' -55.1 NC_003521.1 + 177776 0.66 0.981616
Target:  5'- uCGUcGCCAGGGCcgACG-GGGccuguccgcuGGUGGGCGu -3'
miRNA:   3'- -GCA-UGGUCUCG--UGCaCCU----------UCGCCUGC- -5'
14156 3' -55.1 NC_003521.1 + 95651 0.66 0.981417
Target:  5'- gGUGCCAGAcggaguuGCGCGacUGGccGCGcGACu -3'
miRNA:   3'- gCAUGGUCU-------CGUGC--ACCuuCGC-CUGc -5'
14156 3' -55.1 NC_003521.1 + 132351 0.66 0.979555
Target:  5'- aGUGCU-GAGCACGUugcaGGGuaucAGCGGcACGc -3'
miRNA:   3'- gCAUGGuCUCGUGCA----CCU----UCGCC-UGC- -5'
14156 3' -55.1 NC_003521.1 + 180394 0.66 0.979555
Target:  5'- --cGCCGGAGUACugcugGUGGugcuGGCGGccGCGa -3'
miRNA:   3'- gcaUGGUCUCGUG-----CACCu---UCGCC--UGC- -5'
14156 3' -55.1 NC_003521.1 + 87352 0.66 0.979555
Target:  5'- cCGaGCCGGAGCcCGaggaGGAGGCcgagguggaGGACGa -3'
miRNA:   3'- -GCaUGGUCUCGuGCa---CCUUCG---------CCUGC- -5'
14156 3' -55.1 NC_003521.1 + 7840 0.66 0.979555
Target:  5'- --cGCCAGAagACGagGGGguGGCGGACGg -3'
miRNA:   3'- gcaUGGUCUcgUGCa-CCU--UCGCCUGC- -5'
14156 3' -55.1 NC_003521.1 + 122781 0.66 0.979555
Target:  5'- --gGCCgAGAGCaAUGcGGAccccuGGCGGGCGg -3'
miRNA:   3'- gcaUGG-UCUCG-UGCaCCU-----UCGCCUGC- -5'
14156 3' -55.1 NC_003521.1 + 78179 0.66 0.977327
Target:  5'- gCGgauCCAuGGCgaaacgGCGUGcGGAGCGGGCGc -3'
miRNA:   3'- -GCau-GGUcUCG------UGCAC-CUUCGCCUGC- -5'
14156 3' -55.1 NC_003521.1 + 14853 0.66 0.977327
Target:  5'- aCGUGC---GGCGCGUGGccaacAGCGuGACGg -3'
miRNA:   3'- -GCAUGgucUCGUGCACCu----UCGC-CUGC- -5'
14156 3' -55.1 NC_003521.1 + 213174 0.66 0.977327
Target:  5'- gGUGCCAGAGguUG-GGGcucaGGACGa -3'
miRNA:   3'- gCAUGGUCUCguGCaCCUucg-CCUGC- -5'
14156 3' -55.1 NC_003521.1 + 160776 0.66 0.977327
Target:  5'- gCGUgccGCCGGcGGCACGcGGgcGCGGGu- -3'
miRNA:   3'- -GCA---UGGUC-UCGUGCaCCuuCGCCUgc -5'
14156 3' -55.1 NC_003521.1 + 164734 0.66 0.977327
Target:  5'- -cUACCAccAGCGCG-GGAGGgGGGCa -3'
miRNA:   3'- gcAUGGUc-UCGUGCaCCUUCgCCUGc -5'
14156 3' -55.1 NC_003521.1 + 128748 0.66 0.974925
Target:  5'- --cGCCcGAGCcCGUGGuguAGGUGGugGg -3'
miRNA:   3'- gcaUGGuCUCGuGCACC---UUCGCCugC- -5'
14156 3' -55.1 NC_003521.1 + 136632 0.66 0.974925
Target:  5'- aCGUaaucgGCCAcGGGCGCGgGGcGGCGG-CGa -3'
miRNA:   3'- -GCA-----UGGU-CUCGUGCaCCuUCGCCuGC- -5'
14156 3' -55.1 NC_003521.1 + 48656 0.66 0.973398
Target:  5'- cCGcgACCGGcGCugacaccgcagaccuACGUGGAuccGCGGACGc -3'
miRNA:   3'- -GCa-UGGUCuCG---------------UGCACCUu--CGCCUGC- -5'
14156 3' -55.1 NC_003521.1 + 238367 0.66 0.972343
Target:  5'- gCGUACCcauagcGGGGCGCGgGGAugaacguGCaGGGCGu -3'
miRNA:   3'- -GCAUGG------UCUCGUGCaCCUu------CG-CCUGC- -5'
14156 3' -55.1 NC_003521.1 + 43961 0.66 0.972343
Target:  5'- gGUGCCGuuGC---UGGAGGUGGACGu -3'
miRNA:   3'- gCAUGGUcuCGugcACCUUCGCCUGC- -5'
14156 3' -55.1 NC_003521.1 + 148442 0.66 0.972343
Target:  5'- --aGCCggcGGAGCgACGgcagcgGGcGAGCGGACGg -3'
miRNA:   3'- gcaUGG---UCUCG-UGCa-----CC-UUCGCCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.