Results 1 - 20 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14156 | 5' | -62.8 | NC_003521.1 | + | 23958 | 0.66 | 0.769948 |
Target: 5'- gAUGUCCCgcuccacGGGCCUggaacagucguccgcCGCGG-GCUGCGa -3' miRNA: 3'- gUGCAGGG-------UCUGGA---------------GCGCCgCGGCGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 145263 | 0.66 | 0.767346 |
Target: 5'- gGCGccUCCUcGGCCUCgGCGGCcaGCuCGCGc -3' miRNA: 3'- gUGC--AGGGuCUGGAG-CGCCG--CG-GCGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 115412 | 0.66 | 0.767346 |
Target: 5'- cCACGgccUCCGGACUcagcgcCGCGGCGCgGgGg -3' miRNA: 3'- -GUGCa--GGGUCUGGa-----GCGCCGCGgCgC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 135931 | 0.66 | 0.767346 |
Target: 5'- cCACGgCCgCGGgaugugcgacGCCUCG-GGCGCCuGCGa -3' miRNA: 3'- -GUGCaGG-GUC----------UGGAGCgCCGCGG-CGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 101232 | 0.66 | 0.767346 |
Target: 5'- ---uUCCUGGugC-CGCGGCGCCaCGg -3' miRNA: 3'- gugcAGGGUCugGaGCGCCGCGGcGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 48587 | 0.66 | 0.758608 |
Target: 5'- aACGgccaCCCu--CC-CGCGGCGCCGgGu -3' miRNA: 3'- gUGCa---GGGucuGGaGCGCCGCGGCgC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 238938 | 0.66 | 0.758608 |
Target: 5'- -cCGUCCCGGuACCUgCGCca-GCUGCGg -3' miRNA: 3'- guGCAGGGUC-UGGA-GCGccgCGGCGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 135649 | 0.66 | 0.758608 |
Target: 5'- gGCGgggggCCCAG-CgUCgGCGGCGUCGUc -3' miRNA: 3'- gUGCa----GGGUCuGgAG-CGCCGCGGCGc -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 157079 | 0.66 | 0.758608 |
Target: 5'- -cUGUCCCAGGCCcccCGCGGUGaggaggaGCa -3' miRNA: 3'- guGCAGGGUCUGGa--GCGCCGCgg-----CGc -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 54345 | 0.66 | 0.758608 |
Target: 5'- -uCGcCCUGGGCCacUCGgGGCGUgGCGa -3' miRNA: 3'- guGCaGGGUCUGG--AGCgCCGCGgCGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 108703 | 0.66 | 0.758608 |
Target: 5'- --aGUCgaaCAGGCCgCGCuGCGCCGCc -3' miRNA: 3'- gugCAGg--GUCUGGaGCGcCGCGGCGc -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 115025 | 0.66 | 0.758608 |
Target: 5'- cCACGcacaaccCCUGGGCCUCGCaGGCcgGCUGCc -3' miRNA: 3'- -GUGCa------GGGUCUGGAGCG-CCG--CGGCGc -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 28736 | 0.66 | 0.758608 |
Target: 5'- gCACGccgacaaCCAGACgCgCGCGG-GCCGCGc -3' miRNA: 3'- -GUGCag-----GGUCUG-GaGCGCCgCGGCGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 38711 | 0.66 | 0.758608 |
Target: 5'- -cCGUCCCGGuACCUgCGCca-GCUGCGg -3' miRNA: 3'- guGCAGGGUC-UGGA-GCGccgCGGCGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 152381 | 0.66 | 0.758608 |
Target: 5'- gCGCG-CCCucuacucuAGucAUCUgGCGGUGCCGCGc -3' miRNA: 3'- -GUGCaGGG--------UC--UGGAgCGCCGCGGCGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 83472 | 0.66 | 0.757729 |
Target: 5'- cCACGU-CCAGcAUUUCGCGGUccugcccguagcgGCUGCGg -3' miRNA: 3'- -GUGCAgGGUC-UGGAGCGCCG-------------CGGCGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 224398 | 0.66 | 0.757729 |
Target: 5'- -uCGUCggCCAGccgguacACCUCGCcggccaGGCGCUGCGu -3' miRNA: 3'- guGCAG--GGUC-------UGGAGCG------CCGCGGCGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 223391 | 0.66 | 0.749775 |
Target: 5'- gGCGcCCCgacgcGGGCCgUGUGGCGCCcCGg -3' miRNA: 3'- gUGCaGGG-----UCUGGaGCGCCGCGGcGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 140197 | 0.66 | 0.749775 |
Target: 5'- aGCGcUCCUGGAUCUUgGCGGCcgagucGCCGUGc -3' miRNA: 3'- gUGC-AGGGUCUGGAG-CGCCG------CGGCGC- -5' |
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14156 | 5' | -62.8 | NC_003521.1 | + | 206374 | 0.66 | 0.749775 |
Target: 5'- gACGaccCCCAGGCC-CGCaGCGCCuacGUGg -3' miRNA: 3'- gUGCa--GGGUCUGGaGCGcCGCGG---CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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