miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14156 5' -62.8 NC_003521.1 + 213723 0.66 0.749775
Target:  5'- gAUG-CCCAG-CCa-GaCGGCGCCGCa -3'
miRNA:   3'- gUGCaGGGUCuGGagC-GCCGCGGCGc -5'
14156 5' -62.8 NC_003521.1 + 135931 0.66 0.767346
Target:  5'- cCACGgCCgCGGgaugugcgacGCCUCG-GGCGCCuGCGa -3'
miRNA:   3'- -GUGCaGG-GUC----------UGGAGCgCCGCGG-CGC- -5'
14156 5' -62.8 NC_003521.1 + 145263 0.66 0.767346
Target:  5'- gGCGccUCCUcGGCCUCgGCGGCcaGCuCGCGc -3'
miRNA:   3'- gUGC--AGGGuCUGGAG-CGCCG--CG-GCGC- -5'
14156 5' -62.8 NC_003521.1 + 83472 0.66 0.757729
Target:  5'- cCACGU-CCAGcAUUUCGCGGUccugcccguagcgGCUGCGg -3'
miRNA:   3'- -GUGCAgGGUC-UGGAGCGCCG-------------CGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 223391 0.66 0.749775
Target:  5'- gGCGcCCCgacgcGGGCCgUGUGGCGCCcCGg -3'
miRNA:   3'- gUGCaGGG-----UCUGGaGCGCCGCGGcGC- -5'
14156 5' -62.8 NC_003521.1 + 226714 0.66 0.748887
Target:  5'- gGCGgaCCCAGAcacaggcagcgucCCUCGuuGCGCUGCa -3'
miRNA:   3'- gUGCa-GGGUCU-------------GGAGCgcCGCGGCGc -5'
14156 5' -62.8 NC_003521.1 + 224398 0.66 0.757729
Target:  5'- -uCGUCggCCAGccgguacACCUCGCcggccaGGCGCUGCGu -3'
miRNA:   3'- guGCAG--GGUC-------UGGAGCG------CCGCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 132611 0.66 0.731854
Target:  5'- gGCGUCCgCAacGGCUUCcagacucggcgGCGGCGCCaccgGCGg -3'
miRNA:   3'- gUGCAGG-GU--CUGGAG-----------CGCCGCGG----CGC- -5'
14156 5' -62.8 NC_003521.1 + 60941 0.66 0.72278
Target:  5'- cCACGUCUCAuGACgCUCauccaGCuGUGCCGCa -3'
miRNA:   3'- -GUGCAGGGU-CUG-GAG-----CGcCGCGGCGc -5'
14156 5' -62.8 NC_003521.1 + 140197 0.66 0.749775
Target:  5'- aGCGcUCCUGGAUCUUgGCGGCcgagucGCCGUGc -3'
miRNA:   3'- gUGC-AGGGUCUGGAG-CGCCG------CGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 23958 0.66 0.769948
Target:  5'- gAUGUCCCgcuccacGGGCCUggaacagucguccgcCGCGG-GCUGCGa -3'
miRNA:   3'- gUGCAGGG-------UCUGGA---------------GCGCCgCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 159816 0.66 0.740855
Target:  5'- -uCGUCaCGGACCggcCGUgaGGCGCUGCGc -3'
miRNA:   3'- guGCAGgGUCUGGa--GCG--CCGCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 149212 0.66 0.740855
Target:  5'- cUACGccaCCCAGGCCcacaagaagcUGCGGCGCgGCu -3'
miRNA:   3'- -GUGCa--GGGUCUGGa---------GCGCCGCGgCGc -5'
14156 5' -62.8 NC_003521.1 + 144995 0.66 0.731854
Target:  5'- gCAUGccaCCgAGGCCUCGCG-CGCCGaCa -3'
miRNA:   3'- -GUGCa--GGgUCUGGAGCGCcGCGGC-Gc -5'
14156 5' -62.8 NC_003521.1 + 152381 0.66 0.758608
Target:  5'- gCGCG-CCCucuacucuAGucAUCUgGCGGUGCCGCGc -3'
miRNA:   3'- -GUGCaGGG--------UC--UGGAgCGCCGCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 238938 0.66 0.758608
Target:  5'- -cCGUCCCGGuACCUgCGCca-GCUGCGg -3'
miRNA:   3'- guGCAGGGUC-UGGA-GCGccgCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 153056 0.66 0.731854
Target:  5'- gGCGgccCCCAGGCCUCcucCGcCGCCGgGg -3'
miRNA:   3'- gUGCa--GGGUCUGGAGc--GCcGCGGCgC- -5'
14156 5' -62.8 NC_003521.1 + 115412 0.66 0.767346
Target:  5'- cCACGgccUCCGGACUcagcgcCGCGGCGCgGgGg -3'
miRNA:   3'- -GUGCa--GGGUCUGGa-----GCGCCGCGgCgC- -5'
14156 5' -62.8 NC_003521.1 + 43873 0.66 0.731854
Target:  5'- gGC-UCCCGGGCCgUCGCccacgcuaccGGUGCUGCc -3'
miRNA:   3'- gUGcAGGGUCUGG-AGCG----------CCGCGGCGc -5'
14156 5' -62.8 NC_003521.1 + 5803 0.66 0.72278
Target:  5'- gUACGgccUCCgAGACCUagggGUGGUGCCGgGu -3'
miRNA:   3'- -GUGC---AGGgUCUGGAg---CGCCGCGGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.