miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14156 5' -62.8 NC_003521.1 + 1754 0.68 0.599462
Target:  5'- -uCGUCCuCAGccaggcucucuuCCUCGgaacaCGGCGCCGCGa -3'
miRNA:   3'- guGCAGG-GUCu-----------GGAGC-----GCCGCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 5803 0.66 0.72278
Target:  5'- gUACGgccUCCgAGACCUagggGUGGUGCCGgGu -3'
miRNA:   3'- -GUGC---AGGgUCUGGAg---CGCCGCGGCgC- -5'
14156 5' -62.8 NC_003521.1 + 6671 0.7 0.509273
Target:  5'- aCAUGUCCCgcucgugcugcaGGGCCUgcgccCGCGaGCGCUGCu -3'
miRNA:   3'- -GUGCAGGG------------UCUGGA-----GCGC-CGCGGCGc -5'
14156 5' -62.8 NC_003521.1 + 7939 0.72 0.399675
Target:  5'- cCGCGUagcucauccUCCAGAUCgcCGCGGUGUCGCGg -3'
miRNA:   3'- -GUGCA---------GGGUCUGGa-GCGCCGCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 8453 0.68 0.620149
Target:  5'- gACGguggaCCUccGCUUCGCGGUGCCGCc -3'
miRNA:   3'- gUGCa----GGGucUGGAGCGCCGCGGCGc -5'
14156 5' -62.8 NC_003521.1 + 13164 0.71 0.456906
Target:  5'- gUACGUCUCAgGACCUCcCGGacgGCCGCu -3'
miRNA:   3'- -GUGCAGGGU-CUGGAGcGCCg--CGGCGc -5'
14156 5' -62.8 NC_003521.1 + 16034 0.68 0.629568
Target:  5'- gCGCGUCCCGcacGACgUggUGCgGGCGCUGCu -3'
miRNA:   3'- -GUGCAGGGU---CUGgA--GCG-CCGCGGCGc -5'
14156 5' -62.8 NC_003521.1 + 16621 0.66 0.749775
Target:  5'- gGCGUCaguaCCGcuGGCUcugUCGCGGCGaCCGCu -3'
miRNA:   3'- gUGCAG----GGU--CUGG---AGCGCCGC-GGCGc -5'
14156 5' -62.8 NC_003521.1 + 17347 0.75 0.275172
Target:  5'- cCACcUCCCGGGCCgugaCGcCGGCGCgGCGg -3'
miRNA:   3'- -GUGcAGGGUCUGGa---GC-GCCGCGgCGC- -5'
14156 5' -62.8 NC_003521.1 + 17436 0.73 0.361704
Target:  5'- aCACGgCCC--GCgUCGgGGCGCCGCGa -3'
miRNA:   3'- -GUGCaGGGucUGgAGCgCCGCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 17604 0.68 0.648405
Target:  5'- gACG-CgCCAGGCgUCGCGGCGuauacgaacCCGCu -3'
miRNA:   3'- gUGCaG-GGUCUGgAGCGCCGC---------GGCGc -5'
14156 5' -62.8 NC_003521.1 + 21089 0.68 0.638989
Target:  5'- aCugGUCCCGcGACggCGCGGUcccuCCGCGc -3'
miRNA:   3'- -GugCAGGGU-CUGgaGCGCCGc---GGCGC- -5'
14156 5' -62.8 NC_003521.1 + 22348 0.68 0.597585
Target:  5'- gACGUCCgGGGCCacugcgcccacggCGUGGUGCCGg- -3'
miRNA:   3'- gUGCAGGgUCUGGa------------GCGCCGCGGCgc -5'
14156 5' -62.8 NC_003521.1 + 23091 0.72 0.407569
Target:  5'- uGCGUCCguGGCCgggCGgGGgGCCGgGa -3'
miRNA:   3'- gUGCAGGguCUGGa--GCgCCgCGGCgC- -5'
14156 5' -62.8 NC_003521.1 + 23958 0.66 0.769948
Target:  5'- gAUGUCCCgcuccacGGGCCUggaacagucguccgcCGCGG-GCUGCGa -3'
miRNA:   3'- gUGCAGGG-------UCUGGA---------------GCGCCgCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 24683 0.66 0.72278
Target:  5'- uGCG-CCCAGgugGCCUuccucugcCGCGGCcuccgcGCCGCGc -3'
miRNA:   3'- gUGCaGGGUC---UGGA--------GCGCCG------CGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 27076 0.67 0.685895
Target:  5'- cUACGUggccgccaCCAcGGCCUucUGCGGCGCCGUc -3'
miRNA:   3'- -GUGCAg-------GGU-CUGGA--GCGCCGCGGCGc -5'
14156 5' -62.8 NC_003521.1 + 28736 0.66 0.758608
Target:  5'- gCACGccgacaaCCAGACgCgCGCGG-GCCGCGc -3'
miRNA:   3'- -GUGCag-----GGUCUG-GaGCGCCgCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 30680 0.68 0.600401
Target:  5'- gCGCGaugaCCUcaugAGGCUUauaacaaCGCGGCGCCGCGg -3'
miRNA:   3'- -GUGCa---GGG----UCUGGA-------GCGCCGCGGCGC- -5'
14156 5' -62.8 NC_003521.1 + 33465 0.72 0.426907
Target:  5'- gGCGUggcccugacuggagaCCCAGAUCUCG-GGCGCCacGCGa -3'
miRNA:   3'- gUGCA---------------GGGUCUGGAGCgCCGCGG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.