miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14158 3' -53.5 NC_003521.1 + 46866 0.66 0.993418
Target:  5'- aCCUCGccguCGUGG-GUCCagaaGGCGAaGUGg -3'
miRNA:   3'- -GGAGCau--GUACCaCAGG----CCGCUcUAC- -5'
14158 3' -53.5 NC_003521.1 + 130178 0.66 0.991418
Target:  5'- gCCgugacCGUGCc-GGcGcCCGGCGAGAUGc -3'
miRNA:   3'- -GGa----GCAUGuaCCaCaGGCCGCUCUAC- -5'
14158 3' -53.5 NC_003521.1 + 100198 0.66 0.990251
Target:  5'- cUCUCGgccguguaccgcUGCA-GGUcGUaggCCGGCGAGGUGg -3'
miRNA:   3'- -GGAGC------------AUGUaCCA-CA---GGCCGCUCUAC- -5'
14158 3' -53.5 NC_003521.1 + 163412 0.66 0.988964
Target:  5'- gCCUCGcgACAcGGUGUuuGGaGAuGAUGa -3'
miRNA:   3'- -GGAGCa-UGUaCCACAggCCgCU-CUAC- -5'
14158 3' -53.5 NC_003521.1 + 106065 0.67 0.987549
Target:  5'- cCCUCG---AUGGUGcCCGGaaAGAUGg -3'
miRNA:   3'- -GGAGCaugUACCACaGGCCgcUCUAC- -5'
14158 3' -53.5 NC_003521.1 + 78038 0.67 0.987549
Target:  5'- gCUCGgcCAUGGUGUugagcuuguaguUgGGCGAGuUGg -3'
miRNA:   3'- gGAGCauGUACCACA------------GgCCGCUCuAC- -5'
14158 3' -53.5 NC_003521.1 + 23567 0.67 0.985997
Target:  5'- uCCUCGUccguCAUGGUGgUgGGCGcggGGGUGc -3'
miRNA:   3'- -GGAGCAu---GUACCACaGgCCGC---UCUAC- -5'
14158 3' -53.5 NC_003521.1 + 226304 0.67 0.980448
Target:  5'- cCCUCGgGCGUGGUGUCguugaGGaacaAGAUGu -3'
miRNA:   3'- -GGAGCaUGUACCACAGg----CCgc--UCUAC- -5'
14158 3' -53.5 NC_003521.1 + 117047 0.68 0.97593
Target:  5'- uCCUC-UGCGUGGUGUCUaaCGAGGa- -3'
miRNA:   3'- -GGAGcAUGUACCACAGGccGCUCUac -5'
14158 3' -53.5 NC_003521.1 + 95250 0.68 0.967786
Target:  5'- uCCgcaGaGCcgGGgagGUCCGGCGaAGAUGa -3'
miRNA:   3'- -GGag-CaUGuaCCa--CAGGCCGC-UCUAC- -5'
14158 3' -53.5 NC_003521.1 + 174826 0.68 0.967786
Target:  5'- uUCUCcaGCAgcgacuUGGUGUCCGGCGuGGc- -3'
miRNA:   3'- -GGAGcaUGU------ACCACAGGCCGCuCUac -5'
14158 3' -53.5 NC_003521.1 + 33299 0.68 0.964682
Target:  5'- gCUCGUACAUG----CCGGCGaAGGUGu -3'
miRNA:   3'- gGAGCAUGUACcacaGGCCGC-UCUAC- -5'
14158 3' -53.5 NC_003521.1 + 117707 0.69 0.957858
Target:  5'- aCUUCGUACAgcg-GcCCGGCGAGGa- -3'
miRNA:   3'- -GGAGCAUGUaccaCaGGCCGCUCUac -5'
14158 3' -53.5 NC_003521.1 + 105742 0.69 0.954128
Target:  5'- aCCUUGgucaugGUGGUGUUgGGgGAGAUGc -3'
miRNA:   3'- -GGAGCaug---UACCACAGgCCgCUCUAC- -5'
14158 3' -53.5 NC_003521.1 + 221797 0.69 0.950182
Target:  5'- uCCUCGgcggGCAUGGgcuccgUCGGCGGGGc- -3'
miRNA:   3'- -GGAGCa---UGUACCaca---GGCCGCUCUac -5'
14158 3' -53.5 NC_003521.1 + 74543 0.69 0.950182
Target:  5'- cCCUCGUACGUGGUggacaaguauGUCUgagGGCGGcGAc- -3'
miRNA:   3'- -GGAGCAUGUACCA----------CAGG---CCGCU-CUac -5'
14158 3' -53.5 NC_003521.1 + 169033 0.7 0.937013
Target:  5'- --aCGUGCGugacguccUGGUcGUCCGGgGGGAUGc -3'
miRNA:   3'- ggaGCAUGU--------ACCA-CAGGCCgCUCUAC- -5'
14158 3' -53.5 NC_003521.1 + 103783 0.7 0.921809
Target:  5'- aCUCGcGCAcucgccgccGUGcUCCGGCGAGAUGa -3'
miRNA:   3'- gGAGCaUGUac-------CAC-AGGCCGCUCUAC- -5'
14158 3' -53.5 NC_003521.1 + 220525 0.72 0.849042
Target:  5'- uCCUgGUgcuGCAUGGcG-CCGGCGAGAUc -3'
miRNA:   3'- -GGAgCA---UGUACCaCaGGCCGCUCUAc -5'
14158 3' -53.5 NC_003521.1 + 95509 0.73 0.831556
Target:  5'- cCCUCGUGCuucaggccgaacUGGaUGcCCGGCGAGAc- -3'
miRNA:   3'- -GGAGCAUGu-----------ACC-ACaGGCCGCUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.