miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14158 5' -52.5 NC_003521.1 + 76979 0.66 0.991833
Target:  5'- cGCGUGaUGCUGGCGGCGaUGGg---- -3'
miRNA:   3'- cUGUACgACGACUGCUGC-ACCaacuu -5'
14158 5' -52.5 NC_003521.1 + 88156 0.66 0.989374
Target:  5'- aGCG-GCUGCUGACGcaGCuGUGGgaGAAc -3'
miRNA:   3'- cUGUaCGACGACUGC--UG-CACCaaCUU- -5'
14158 5' -52.5 NC_003521.1 + 19984 0.66 0.989374
Target:  5'- gGACuGUGUucgugGCUGGCGGCGUGGa---- -3'
miRNA:   3'- -CUG-UACGa----CGACUGCUGCACCaacuu -5'
14158 5' -52.5 NC_003521.1 + 123158 0.67 0.986374
Target:  5'- gGugGUGCUGCUGcugagguggcgGCGGCGgcGGggGAc -3'
miRNA:   3'- -CugUACGACGAC-----------UGCUGCa-CCaaCUu -5'
14158 5' -52.5 NC_003521.1 + 104212 0.67 0.986374
Target:  5'- uACGUGCUGCUgcagcccagcGAgGACGUGGa---- -3'
miRNA:   3'- cUGUACGACGA----------CUgCUGCACCaacuu -5'
14158 5' -52.5 NC_003521.1 + 122709 0.67 0.984648
Target:  5'- cGGCGggGCUGgaGGCGGuCGUGGUcgUGGg -3'
miRNA:   3'- -CUGUa-CGACgaCUGCU-GCACCA--ACUu -5'
14158 5' -52.5 NC_003521.1 + 208466 0.67 0.982762
Target:  5'- --aGUGCaGCUGACGGUGUGGgaGAGu -3'
miRNA:   3'- cugUACGaCGACUGCUGCACCaaCUU- -5'
14158 5' -52.5 NC_003521.1 + 22973 0.67 0.980705
Target:  5'- -uCGUGCUGCUGGgGcucuGCGccUGGUUGAc -3'
miRNA:   3'- cuGUACGACGACUgC----UGC--ACCAACUu -5'
14158 5' -52.5 NC_003521.1 + 123058 0.67 0.980705
Target:  5'- -cCAUGCUGCUggGACGGCGgcGGcgGAGg -3'
miRNA:   3'- cuGUACGACGA--CUGCUGCa-CCaaCUU- -5'
14158 5' -52.5 NC_003521.1 + 195333 0.68 0.976051
Target:  5'- cGACGUGUagaagGCUGcCGugGUGGUgggccgggUGAAg -3'
miRNA:   3'- -CUGUACGa----CGACuGCugCACCA--------ACUU- -5'
14158 5' -52.5 NC_003521.1 + 12344 0.68 0.970623
Target:  5'- aGGCuAUGgUGCUgGGCGugGUGGgcGAGu -3'
miRNA:   3'- -CUG-UACgACGA-CUGCugCACCaaCUU- -5'
14158 5' -52.5 NC_003521.1 + 22418 0.68 0.967601
Target:  5'- -cCAUGCUGC--GCGGCGUGGccGAGu -3'
miRNA:   3'- cuGUACGACGacUGCUGCACCaaCUU- -5'
14158 5' -52.5 NC_003521.1 + 18332 0.68 0.967288
Target:  5'- cGugGUGCUGUUGGaccaguuCGGCGUGGUc--- -3'
miRNA:   3'- -CugUACGACGACU-------GCUGCACCAacuu -5'
14158 5' -52.5 NC_003521.1 + 19723 0.68 0.964366
Target:  5'- uACAcGCUGCUGACcaGCGUGGcggUGAc -3'
miRNA:   3'- cUGUaCGACGACUGc-UGCACCa--ACUu -5'
14158 5' -52.5 NC_003521.1 + 56577 0.69 0.940175
Target:  5'- cGACGUGCauuccUUGAgGAUGUGGUUGAu -3'
miRNA:   3'- -CUGUACGac---GACUgCUGCACCAACUu -5'
14158 5' -52.5 NC_003521.1 + 30229 0.7 0.930203
Target:  5'- ---uUGCUGCUGACGgGCGUGGa---- -3'
miRNA:   3'- cuguACGACGACUGC-UGCACCaacuu -5'
14158 5' -52.5 NC_003521.1 + 36394 0.7 0.924851
Target:  5'- -cCGUGCUGCUGGCGGCagcgcgGGgcgUGGAu -3'
miRNA:   3'- cuGUACGACGACUGCUGca----CCa--ACUU- -5'
14158 5' -52.5 NC_003521.1 + 80301 0.71 0.901006
Target:  5'- cGACGUGCUGgUGACG--GUGGUgcUGGAg -3'
miRNA:   3'- -CUGUACGACgACUGCugCACCA--ACUU- -5'
14158 5' -52.5 NC_003521.1 + 232554 0.72 0.842197
Target:  5'- aGAguUGCUGCUGACGGuuucCGUGGUg--- -3'
miRNA:   3'- -CUguACGACGACUGCU----GCACCAacuu -5'
14158 5' -52.5 NC_003521.1 + 116364 0.75 0.712082
Target:  5'- cGACGaggccgagcUGCUGCUGccgcGCGACGUGGUgGAAc -3'
miRNA:   3'- -CUGU---------ACGACGAC----UGCUGCACCAaCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.