miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1416 3' -62 NC_001335.1 + 33856 0.66 0.362881
Target:  5'- gGCCGAGGUUgcaCGGCUCCcacgguucgAGAGuGAUCu -3'
miRNA:   3'- -UGGCUCCGA---GCCGAGG---------UCUCcCUGGu -5'
1416 3' -62 NC_001335.1 + 28442 0.66 0.354656
Target:  5'- cCCGAGGaccgugaacuucCUCGGCUCCAucAGGGcacguCCAc -3'
miRNA:   3'- uGGCUCC------------GAGCCGAGGUc-UCCCu----GGU- -5'
1416 3' -62 NC_001335.1 + 14425 0.66 0.345762
Target:  5'- aGCCGAGGCacgcucccugaguUCGGCUUCGaAGGcGGCgAg -3'
miRNA:   3'- -UGGCUCCG-------------AGCCGAGGUcUCC-CUGgU- -5'
1416 3' -62 NC_001335.1 + 1772 0.67 0.308106
Target:  5'- uGCCGAGGC-CGGCUgUCGGAGc-GCCGu -3'
miRNA:   3'- -UGGCUCCGaGCCGA-GGUCUCccUGGU- -5'
1416 3' -62 NC_001335.1 + 41417 0.67 0.300817
Target:  5'- uGCCGGGGC-CGGCg-CAGAccaGGACUAg -3'
miRNA:   3'- -UGGCUCCGaGCCGagGUCUc--CCUGGU- -5'
1416 3' -62 NC_001335.1 + 34066 0.67 0.300817
Target:  5'- cACCGAGuGCUCaaGGCacucUCC-GAGGGAgCCGu -3'
miRNA:   3'- -UGGCUC-CGAG--CCG----AGGuCUCCCU-GGU- -5'
1416 3' -62 NC_001335.1 + 9858 0.67 0.293661
Target:  5'- uGCCGugGGGCUCGGggagCCu--GGGACCGu -3'
miRNA:   3'- -UGGC--UCCGAGCCga--GGucuCCCUGGU- -5'
1416 3' -62 NC_001335.1 + 43077 0.7 0.20712
Target:  5'- gUCGAGGCUCGGaUCCAGGcuGGuGACUu -3'
miRNA:   3'- uGGCUCCGAGCCgAGGUCU--CC-CUGGu -5'
1416 3' -62 NC_001335.1 + 3223 0.7 0.201867
Target:  5'- gGCUGGuagcGGCagCGGCUCUAGAaaccccucggGGGACCAu -3'
miRNA:   3'- -UGGCU----CCGa-GCCGAGGUCU----------CCCUGGU- -5'
1416 3' -62 NC_001335.1 + 32893 0.72 0.136048
Target:  5'- aGCCGGGGC-CGGCUCgGGcugggcAGGGGCg- -3'
miRNA:   3'- -UGGCUCCGaGCCGAGgUC------UCCCUGgu -5'
1416 3' -62 NC_001335.1 + 46566 0.74 0.095336
Target:  5'- uACCGAGGCUCGaaagccuGCUCCGGGcGGACa- -3'
miRNA:   3'- -UGGCUCCGAGC-------CGAGGUCUcCCUGgu -5'
1416 3' -62 NC_001335.1 + 47708 1.07 0.000278
Target:  5'- gACCGAGGCUCGGCUCCAGAGGGACCAc -3'
miRNA:   3'- -UGGCUCCGAGCCGAGGUCUCCCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.