Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1416 | 5' | -53.3 | NC_001335.1 | + | 36554 | 0.66 | 0.845211 |
Target: 5'- cCACGGUGgccgugGGUGGAGAUccAGCCuGGa -3' miRNA: 3'- -GUGCUACag----CCACCUCUAc-UUGGcCC- -5' |
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1416 | 5' | -53.3 | NC_001335.1 | + | 6932 | 0.68 | 0.748977 |
Target: 5'- gGCGuaccugcucGUCGGUGGGGAUGAACa--- -3' miRNA: 3'- gUGCua-------CAGCCACCUCUACUUGgccc -5' |
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1416 | 5' | -53.3 | NC_001335.1 | + | 31882 | 0.68 | 0.724748 |
Target: 5'- gACGAgGUCgucucggucgucggGGUGGAGcuugaacaGAGCCGGGg -3' miRNA: 3'- gUGCUaCAG--------------CCACCUCua------CUUGGCCC- -5' |
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1416 | 5' | -53.3 | NC_001335.1 | + | 20550 | 0.69 | 0.640852 |
Target: 5'- gGCGcgGUCGGUGGAGcgauUGAccucccgccuCUGGGc -3' miRNA: 3'- gUGCuaCAGCCACCUCu---ACUu---------GGCCC- -5' |
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1416 | 5' | -53.3 | NC_001335.1 | + | 37247 | 0.73 | 0.44648 |
Target: 5'- gGCGAUGUCgaccaccguguccuGGUGGuAGccguucuccAUGAACCGGGc -3' miRNA: 3'- gUGCUACAG--------------CCACC-UC---------UACUUGGCCC- -5' |
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1416 | 5' | -53.3 | NC_001335.1 | + | 2312 | 0.75 | 0.348893 |
Target: 5'- cCGCGAgGUCGGcaaGGAG-UGAGCUGGGc -3' miRNA: 3'- -GUGCUaCAGCCa--CCUCuACUUGGCCC- -5' |
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1416 | 5' | -53.3 | NC_001335.1 | + | 47673 | 1.09 | 0.001719 |
Target: 5'- uCACGAUGUCGGUGGAGAUGAACCGGGc -3' miRNA: 3'- -GUGCUACAGCCACCUCUACUUGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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